RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 NPIPA1Q9UND3 350 aa19.83■□□□□ 0.77
SNX1-210ENST00000560260 PCNX3Q9H6A9 2034 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 ACOT7O00154 380 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 GCM2O75603 506 aaPredicted RBP19.82■□□□□ 0.76
SNX1-210ENST00000560260 ESRRAP11474 423 aaPredicted RBP19.82■□□□□ 0.76
SNX1-210ENST00000560260 GDF1P27539 372 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 PCGF2P35227 344 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 SLC25A3Q00325 362 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 ZNF117Q03924 483 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 PRAMEF8Q5VWM4 474 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 PRAMEF7Q5VXH5 474 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 CBLN3Q6UW01 205 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 VRK2Q86Y07 508 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 METTL25Q8N6Q8 603 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 C11orf65Q8NCR3 313 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 ARSGQ96EG1 525 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 SH3YL1Q96HL8 342 aaPredicted RBP19.82■□□□□ 0.76
SNX1-210ENST00000560260 ECSITQ9BQ95 431 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 DEFB127Q9H1M4 99 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 MTHFD2LQ9H903 347 aaPredicted RBP19.82■□□□□ 0.76
SNX1-210ENST00000560260 ABCD2Q9UBJ2 740 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 CHST2Q9Y4C5 530 aa19.82■□□□□ 0.76
SNX1-210ENST00000560260 ZNF462Q96JM2 2506 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 A0A0G2JPF8 293 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 TMEM247A6NEH6 219 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 FAM220BPB1ANY3 271 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 HNRNPCL2B2RXH8 293 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 HNRNPCL3B7ZW38 293 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 C5orf58C9J3I9 102 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 GMFGO60234 142 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 HNRNPCL1O60812 293 aaKnown RBP19.81■□□□□ 0.76
SNX1-210ENST00000560260 HNRNPCL4P0DMR1 293 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 AQP1P29972 269 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 CPOXP36551 454 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 PCBP3P57721 371 aaKnown RBP19.81■□□□□ 0.76
SNX1-210ENST00000560260 HSF1Q00613 529 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 RBBP4Q09028 425 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 C17orf67Q0P5P2 114 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 VMACQ2NL98 169 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 REEP3Q6NUK4 255 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 SPPL2CQ8IUH8 684 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 HIPK4Q8NE63 616 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 FAM71CQ8NEG0 241 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 OR4K17Q8NGC6 315 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 OIT3Q8WWZ8 545 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 MIB2Q96AX9 1013 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 REXO5Q96IC2 774 aaKnown RBP19.81■□□□□ 0.76
SNX1-210ENST00000560260 GPR137Q96N19 417 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 SPATA9Q9BWV2 254 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 SDHAF3Q9NRP4 125 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 AGPAT4Q9NRZ5 378 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 CARD8Q9Y2G2 431 aa19.81■□□□□ 0.76
SNX1-210ENST00000560260 ZNHIT1O43257 154 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 CALB2P22676 271 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 PGM1P36871 562 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 LIPEQ05469 1076 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 SKP2Q13309 424 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 GNA13Q14344 377 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 ZNF836Q6ZNA1 936 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 MISPQ8IVT2 679 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 CHERPQ8IWX8 916 aaKnown RBP19.8■□□□□ 0.76
SNX1-210ENST00000560260 PGAM4Q8N0Y7 254 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 OR52P1PQ8NH57 321 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 WDR60Q8WVS4 1066 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 ZNF524Q96C55 264 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 OR2B2Q9GZK3 357 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 SLC6A15Q9H2J7 730 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 PLSCR2Q9NRY7 297 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 TMEM181Q9P2C4 612 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 B4GALT7Q9UBV7 327 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 PACSIN3Q9UKS6 424 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 ANGPT4Q9Y264 503 aa19.8■□□□□ 0.76
SNX1-210ENST00000560260 ZNF443Q9Y2A4 671 aaPredicted RBP19.8■□□□□ 0.76
SNX1-210ENST00000560260 GPC6Q9Y625 555 aaPredicted RBP19.8■□□□□ 0.76
SNX1-210ENST00000560260 HCRTR2O43614 444 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 CBR3O75828 277 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 HPNP05981 417 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 DBIP07108 87 aaKnown RBP19.79■□□□□ 0.76
SNX1-210ENST00000560260 UBL4AP11441 157 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 NID1P14543 1247 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 ADH7P40394 386 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 GSK3BP49841 420 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 CRYBA2P53672 197 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 EIPR1Q53HC9 387 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 RINLQ6ZS11 566 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 FGD2Q7Z6J4 655 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 COMTD1Q86VU5 262 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 PEX5LQ8IYB4 626 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 RBM15BQ8NDT2 890 aaKnown RBP19.79■□□□□ 0.76
SNX1-210ENST00000560260 FAM83FQ8NEG4 500 aaPredicted RBP19.79■□□□□ 0.76
SNX1-210ENST00000560260 CNOT9Q92600 299 aaKnown RBP19.79■□□□□ 0.76
SNX1-210ENST00000560260 PMM1Q92871 262 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 QPCTLQ9NXS2 382 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 ICAM5Q9UMF0 924 aa19.79■□□□□ 0.76
SNX1-210ENST00000560260 B2RBV5 119 aa19.78■□□□□ 0.76
SNX1-210ENST00000560260 ADAM11O75078 769 aa19.78■□□□□ 0.76
SNX1-210ENST00000560260 PDE9AO76083 593 aa19.78■□□□□ 0.76
SNX1-210ENST00000560260 CSTAP01040 98 aa19.78■□□□□ 0.76
SNX1-210ENST00000560260 IGHG3P01860 377 aa19.78■□□□□ 0.76
SNX1-210ENST00000560260 UBTFL6P0CB48 400 aaPredicted RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms