RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	RPS27A	P62979	156 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	UBA52	P62987	128 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	AIMP2	Q13155	320 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	C3orf38	Q5JPI3	329 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ALG1L	Q6GMV1	187 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	FAAP20	Q6NZ36	180 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	UNQ6126/PRO20091	Q6UXV3	157 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF836	Q6ZNA1	936 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CCDC190	Q86UF4	302 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF584	Q8IVC4	421 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	C2CD4C	Q8TF44	421 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ASB11	Q8WXH4	323 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	KIAA1143	Q96AT1	154 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	DCLRE1C	Q96SD1	692 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	AIFM2	Q9BRQ8	373 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	RGCC	Q9H4X1	137 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ISG20L2	Q9H9L3	353 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	PLEKHA1	Q9HB21	404 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ASIC5	Q9NY37	505 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	GREB1L	Q9C091	1923 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	EDDM13	A0A1B0GTR0	161 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	DSCR3	O14972	297 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SSX5	O60225	188 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	OAZ2	O95190	189 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	VNN2	O95498	520 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	TCRB	P04435	133 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	AMY2A	P04746	511 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	FURIN	P09958	794 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CFL1	P23528	166 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	FXYD6P3	P58550	94 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	RAB5B	P61020	215 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	DYRK1A	Q13627	763 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	LYPD8	Q6UX82	237 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	PTOV1	Q86YD1	416 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	IFNL1	Q8IU54	200 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC38A6	Q8IZM9	456 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF248	Q8NDW4	579 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR13C5	Q8NGS8	318 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	BRIX1	Q8TDN6	353 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	NSMAF	Q92636	917 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	TANK	Q92844	425 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	DVL3	Q92997	716 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	UCN3	Q969E3	161 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	C5orf34	Q96MH7	638 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR2A14	Q96R47	310 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	RAB11FIP5	Q9BXF6	653 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ACTRT3	Q9BYD9	372 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	MVB12B	Q9H7P6	319 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF334	Q9HCZ1	680 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SRA1	Q9HD15	236 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	FZD3	Q9NPG1	666 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	PCDHB16	Q9NRJ7	776 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ACER3	Q9NUN7	267 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	C14orf166	Q9Y224	244 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR1A2	Q9Y585	309 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ARPC4-TTLL3	A0A0A6YYG9	625 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005		A0A0A6YYH2	397 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005		A6NJ64	397 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC22A31	A6NKX4	558 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF878	C9JN71	531 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005		I6L893	689 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SNAPC5	O75971	98 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	UBXN7	O94888	489 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	APOD	P05090	189 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CD2	P06729	351 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	GPLD1	P80108	840 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	GALK2	Q01415	458 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	FABP5	Q01469	135 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	GPR50	Q13585	617 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CCNJ	Q5T5M9	372 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CARD17	Q5XLA6	110 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	FBXO42	Q6P3S6	717 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CHCHD4	Q8N4Q1	142 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CLDN22	Q8N7P3	220 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	KREMEN2	Q8NCW0	462 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR13C2	Q8NGS9	318 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SRR	Q9GZT4	340 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ERVMER34-1	Q9H9K5	563 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	PDF	Q9HBH1	243 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	TDP1	Q9NUW8	608 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	COPZ2	Q9P299	210 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CHST2	Q9Y4C5	530 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	C1orf226	A1L170	272 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	FXYD1	O00168	92 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC31A1	O15431	190 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	PIP	P12273	146 aa	Predicted RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLC2A5	P22732	501 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	IL32	P24001	234 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	HTR2A	P28223	471 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	GDNF	P39905	211 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	PBX2	P40425	430 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	IFITM3	Q01628	133 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	CHAF1B	Q13112	559 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	SQSTM1	Q13501	440 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	EXOSC2	Q13868	293 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	ELOA	Q14241	798 aa	Known RBP	4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	TSC22D1	Q15714	1073 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	MORN1	Q5T089	497 aa		4.68	□□□□□ -1.66
SYNE2-223	ENST00000557005	HBM	Q6B0K9	141 aa		4.68	□□□□□ -1.66

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