RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 LILRB4Q8NHJ6 448 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 RHOXF1Q8NHV9 184 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 TYMSOSQ8TAI1 123 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 MCUR1Q96AQ8 359 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 TMEM45BQ96B21 275 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 NRBF2Q96F24 287 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 CXorf58Q96LI9 332 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 CHP1Q99653 195 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 CITED1Q99966 193 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 WRAP53Q9BUR4 548 aaKnown RBP3.92□□□□□ -1.78
SCFD1-211ENST00000554437 CXXC4Q9H2H0 198 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 SGK2Q9HBY8 427 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 NEK6Q9HC98 313 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 FAM120CQ9NX05 1096 aaKnown RBP3.92□□□□□ -1.78
SCFD1-211ENST00000554437 TECRQ9NZ01 308 aaKnown RBP3.92□□□□□ -1.78
SCFD1-211ENST00000554437 P2RX2Q9UBL9 471 aa3.92□□□□□ -1.78
SCFD1-211ENST00000554437 EIF3KQ9UBQ5 218 aaKnown RBP3.92□□□□□ -1.78
SCFD1-211ENST00000554437 MRTO4Q9UKD2 239 aaKnown RBP3.92□□□□□ -1.78
SCFD1-211ENST00000554437 ZNF490Q9ULM2 529 aaPredicted RBP3.92□□□□□ -1.78
SCFD1-211ENST00000554437 SH3PXD2BA1X283 911 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 NPIPA2E9PIF3 369 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 ARPC3O15145 178 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 ZNF354AO60765 605 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 TRIM3O75382 744 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 NDUFB10O96000 172 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 HIST1H2AGP0C0S8 130 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CCDC172P0C7W6 258 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 OR8G3PP0DMU2 310 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CT45A8P0DMV1 189 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CT45A9P0DMV2 189 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 TROVE2P10155 538 aaKnown RBP eCLIP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 DBTP11182 482 aaKnown RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CDKN1BP46527 198 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 P2RY14Q15391 338 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 PCK2Q16822 640 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 HKDC1Q2TB90 917 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 DCAF4L1Q3SXM0 396 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CT45A2Q5DJT8 189 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 VWA2Q5GFL6 755 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CCDC122Q5T0U0 273 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 LIPJQ5W064 366 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 LRRC66Q68CR7 880 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 Q6ZPB1 254 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CENPUQ71F23 418 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 LHFPL4Q7Z7J7 247 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 PAQR7Q86WK9 346 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 OFCC1Q8IZS5 231 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 GPR137CQ8N3F9 429 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 SPATA4Q8NEY3 305 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 OR4L1Q8NH43 312 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 RAET1EQ8TD07 263 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 AGAP11Q8TF27 550 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 HIST1H2ACQ93077 130 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 MRPL53Q96EL3 112 aaKnown RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 C12orf66Q96MD2 445 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 FUNDC2Q9BWH2 189 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 GSDMCQ9BYG8 508 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 LZTFL1Q9NQ48 299 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 ONECUT1Q9UBC0 465 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 IFT52Q9Y366 437 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 GON4LQ3T8J9 2241 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 ZMYM6O95789 1325 aa3.91□□□□□ -1.78
SCFD1-211ENST00000554437 CENPJQ9HC77 1338 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-211ENST00000554437 TRAV26-1A0A087WT03 109 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 METTL21EPA6NDL7 271 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 ZNF879B4DU55 563 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 CDH16O75309 829 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 VENTXO95231 258 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 LGI1O95970 557 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 IVLP07476 585 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 ALPIP09923 528 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 GCFC2P16383 781 aaKnown RBP3.9□□□□□ -1.79
SCFD1-211ENST00000554437 UQCRC2P22695 453 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 CPN2P22792 545 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 CHMLP26374 656 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 SLC11A1P49279 550 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 AP3M2P53677 418 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 TRDNQ13061 729 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 EMC2Q15006 297 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 PIP5KL1Q5T9C9 394 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 DDI2Q5TDH0 399 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 METTL11BQ5VVY1 283 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 TMEM225Q6GV28 225 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 PYHIN1Q6K0P9 492 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 RFWD3Q6PCD5 774 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 VSTM4Q8IW00 320 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 BEST4Q8NFU0 473 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 OR5D13Q8NGL4 314 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 OR6M1Q8NGM8 313 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 ZPLD1Q8TCW7 415 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 SPRYD4Q8WW59 207 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-211ENST00000554437 HPDLQ96IR7 371 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 VSTM2LQ96N03 204 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 CASD1Q96PB1 797 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 CCNL2Q96S94 520 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-211ENST00000554437 ELL3Q9HB65 397 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-211ENST00000554437 CLEC5AQ9NY25 188 aa3.9□□□□□ -1.79
SCFD1-211ENST00000554437 ERVK-18Q9QC07 812 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms