RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ALKBH7Q9BT30 221 aaPredicted RBP3.38□□□□□ -1.87
LIMA1-208ENST00000551691 MED10Q9BTT4 135 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 NUDT9Q9BW91 350 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 ASB7Q9H672 318 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 COQ10BQ9H8M1 238 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 MCCC2Q9HCC0 563 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 PHPT1Q9NRX4 125 aaPredicted RBP3.38□□□□□ -1.87
LIMA1-208ENST00000551691 FGF21Q9NSA1 209 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 APOBEC3BQ9UH17 382 aaKnown RBP3.38□□□□□ -1.87
LIMA1-208ENST00000551691 TMED7Q9Y3B3 224 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 C2CD2Q9Y426 696 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 CNTRLQ7Z7A1 2325 aa3.38□□□□□ -1.87
LIMA1-208ENST00000551691 KMT2CQ8NEZ4 4911 aaKnown RBP3.38□□□□□ -1.87
LIMA1-208ENST00000551691 A0A087WZY1 265 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ANKDD1BA6NHY2 528 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 H0YIG0 161 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 EPHB6O15197 1021 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 SLC22A2O15244 555 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 RIPK2O43353 540 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PRKRAO75569 313 aaKnown RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 STK17BO94768 372 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PMS2P2O95744 297 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 APOHP02749 345 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 RAF1P04049 648 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CTSLP07711 333 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 EPB41P11171 864 aaKnown RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 SKILP12757 684 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CDH1P12830 882 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CCDC130P13994 396 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 LHCGRP22888 699 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 WARSP23381 471 aaKnown RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CD1CP29017 333 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CA5AP35218 305 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 MDH1P40925 334 aaKnown RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ARCN1P48444 511 aaKnown RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 HNMTP50135 292 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ABATP80404 500 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 RUNX1T1Q06455 604 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ELP6Q0PNE2 266 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CDH18Q13634 790 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 TRADDQ15628 312 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ZRSR1Q15695 479 aaKnown RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 MPPE1Q53F39 396 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CMPK2Q5EBM0 449 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 DCAF10Q5QP82 559 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 DCAF12Q5T6F0 453 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ATAD3BQ5T9A4 648 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PIP5KL1Q5T9C9 394 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 LCN1P1Q5VSP4 162 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 SLC25A24Q6NUK1 477 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CREB3L2Q70SY1 520 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 TMEM110Q86TL2 294 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PRUNE1Q86TP1 453 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PARGQ86W56 976 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 HORMAD1Q86X24 394 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 TMEM219Q86XT9 240 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ZNF573Q86YE8 665 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 APLFQ8IW19 511 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 C12orf29Q8N999 325 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 WFDC11Q8NEX6 87 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 OR5B17Q8NGF7 314 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PHLDA1Q8WV24 401 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CTNNBL1Q8WYA6 563 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PNPLA2Q96AD5 504 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 RAB7BQ96AH8 199 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ESAMQ96AP7 390 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 FAM131CQ96AQ9 280 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 TMEM159Q96B96 161 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 MARK4Q96L34 752 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 KLF6Q99612 283 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 MAP3K3Q99759 626 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 SLC17A9Q9BYT1 436 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ELOVL4Q9GZR5 314 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ING2Q9H160 280 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 CXXC4Q9H2H0 198 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 ZBTB20Q9HC78 741 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 PALMDQ9NP74 551 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 A4GALTQ9NPC4 353 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 COX16Q9P0S2 106 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 LAMP5Q9UJQ1 280 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 MGAT4BQ9UQ53 548 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 DLGAP4Q9Y2H0 992 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 KLK4Q9Y5K2 254 aa3.37□□□□□ -1.87
LIMA1-208ENST00000551691 KLF2Q9Y5W3 355 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-208ENST00000551691 FER1L5A0AVI2 2057 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 IGLV5-52A0A0A0MRZ9 124 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 TEX13DA0A0J9YY54 714 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-208ENST00000551691 A0A1W2PN81 502 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 IGLON5A6NGN9 336 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 A8MXQ7 604 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 HHLA1C9JL84 531 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 ACSL4O60488 711 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 NEMFO60524 1076 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 WISP2O76076 250 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 PIGNO95427 931 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 NR3C1P04150 777 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 YES1P07947 543 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 NUDT17P0C025 328 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 DAOP14920 347 aa3.36□□□□□ -1.87
LIMA1-208ENST00000551691 CHRNA7P36544 502 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms