RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TEX44Q53QW1 395 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 LCE3EQ5T5B0 92 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 ATF7IP2Q5U623 682 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 ACOT1Q86TX2 421 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 HPS6Q86YV9 775 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 OR9A4Q8NGU2 314 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 OR2T3Q8NH03 318 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 CCDC26Q8TAB7 109 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 TFB1MQ8WVM0 346 aaKnown RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 SPRYD4Q8WW59 207 aaPredicted RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 MYLPFQ96A32 169 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 C1orf147Q96MC9 270 aaPredicted RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 SLC30A2Q9BRI3 323 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 FEM1AQ9BSK4 669 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 ZSCAN5AQ9BUG6 496 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 TSSK1BQ9BXA7 367 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 ELOVL4Q9GZR5 314 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 OPN3Q9H1Y3 402 aaPredicted RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 RAB18Q9NP72 206 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 PNO1Q9NRX1 252 aaKnown RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 MRPS33Q9Y291 106 aaKnown RBP3.15□□□□□ -1.91
VPS29-205ENST00000548539 ATP10DQ9P241 1426 aa3.15□□□□□ -1.91
VPS29-205ENST00000548539 E9PLD3 99 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 H3BMQ9 156 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 GPAA1O43292 621 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 TSC22D2O75157 780 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 MTX2O75431 263 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 CA1P00915 261 aaPredicted RBP3.14□□□□□ -1.91
VPS29-205ENST00000548539 HNF1AP20823 631 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 NF2P35240 595 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 HPCAL1P37235 193 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 FNTAP49354 379 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 CBX1P83916 185 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 CUL1Q13616 776 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 DPYSL3Q14195 570 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 KCNJ11Q14654 390 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 TGIF1Q15583 401 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 QRICH1Q2TAL8 776 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 GGTA1PQ4G0N0 100 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 CFAP157Q5JU67 520 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 C10orf120Q5SQS8 335 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 UFSP1Q6NVU6 142 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 RGS9BPQ6ZS82 235 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 GPR65Q8IYL9 337 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 SLC38A6Q8IZM9 456 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.14□□□□□ -1.91
VPS29-205ENST00000548539 STXBP6Q8NFX7 210 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 OR5L2Q8NGL0 311 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 GTSF1Q8WW33 167 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 ARNTL2Q8WYA1 636 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 TMEM80Q96HE8 168 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 OR5M11Q96RB7 305 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 RIT2Q99578 217 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 CRACR2AQ9BSW2 395 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 GLT8D2Q9H1C3 349 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 GORASP2Q9H8Y8 452 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 RPS10P5Q9NQ39 176 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 PAK1IP1Q9NWT1 392 aaPredicted RBP3.14□□□□□ -1.91
VPS29-205ENST00000548539 EHFQ9NZC4 300 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 RNF14Q9UBS8 474 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 L3MBTL1Q9Y468 752 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 MAD1L1Q9Y6D9 718 aa3.14□□□□□ -1.91
VPS29-205ENST00000548539 MPHOSPH10O00566 681 aaKnown RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 MAGEB3O15480 346 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 SCRG1O75711 98 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 DUSP14O95147 198 aaKnown RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 THY1P04216 161 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 CD55P08174 381 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 TPSB2P20231 275 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 IGHV1-2P23083 117 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 XCR1P46094 333 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 SLC25A1P53007 311 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 DSCR10P59022 87 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 RND3P61587 244 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 VLDLRP98155 873 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 OTUD4Q01804 1114 aaKnown RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 TPSAB1Q15661 275 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 TATDN3Q17R31 274 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 Q1RN00 199 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 C15orf32Q32M92 178 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 DCST2Q5T1A1 773 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 ATAD3CQ5T2N8 411 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 RNLSQ5VYX0 342 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 TTC23Q5W5X9 447 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 PVRIGQ6DKI7 326 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 APTXQ7Z2E3 356 aaKnown RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 VASH2Q86V25 355 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 C9orf40Q8IXQ3 194 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 KLHL30-AS1Q8NEE0 82 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 OR51G2Q8NGK0 314 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 OR52M1Q8NGK5 317 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 FAM3CQ92520 227 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 PSMG2Q969U7 264 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 SENP8Q96LD8 212 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 C12orf66Q96MD2 445 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 NOL4LQ96MY1 436 aaPredicted RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 SLC6A7Q99884 636 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 DUSP16Q9BY84 665 aa3.13□□□□□ -1.91
VPS29-205ENST00000548539 CRNKL1Q9BZJ0 848 aaKnown RBP3.13□□□□□ -1.91
VPS29-205ENST00000548539 POLR1EQ9GZS1 481 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms