RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ATP13A2Q9NQ11 1180 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 HINT3Q9NQE9 182 aaKnown RBP17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 C2orf42Q9NWW7 574 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 POMT2Q9UKY4 750 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 UNC119BA6NIH7 251 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 SOCS6O14544 535 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 KCNK2O95069 426 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 SNX4O95219 450 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 ZC3H14Q6PJT7 736 aaKnown RBP17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 ZFP41Q8N8Y5 198 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 OR52R1Q8NGF1 315 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 RNF217Q8TC41 542 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 ZDHHC1Q8WTX9 485 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 TMEM239Q8WW34 195 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 SLC25A46Q96AG3 418 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 TM9SF2Q99805 663 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 RBCK1Q9BYM8 510 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 OR52D1Q9H346 318 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 KRCC1Q9NPI7 259 aaPredicted RBP17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 TOR4AQ9NXH8 423 aa17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 EXOGQ9Y2C4 368 aaKnown RBP17.19■□□□□ 0.34
PRPF40B-208ENST00000548436 THADAQ6YHU6 1953 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 FAM183AA6NL82 134 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 B4DGG1 531 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 CHST10O43529 356 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 HTR1FP30939 366 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 ZNF155Q12901 538 aaPredicted RBP17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 NXNL2Q5VZ03 156 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 CPOQ8IVL8 374 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 LAX1Q8IWV1 398 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 BRIX1Q8TDN6 353 aaKnown RBP17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 UFD1Q92890 307 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 C1GALT1C1Q96EU7 318 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 PHOX2BQ99453 314 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 C14orf119Q9NWQ9 140 aa17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 SIDT1Q9NXL6 827 aaKnown RBP17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 WSB2Q9NYS7 404 aaPredicted RBP17.18■□□□□ 0.34
PRPF40B-208ENST00000548436 NKX2-2O95096 273 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 DLGAP3O95886 979 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 IL1AP01583 271 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 HMGN1P05114 100 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 SLC35E2P0CK97 266 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 PSPHP78330 225 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 TMEM44Q2T9K0 475 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 ARMC6Q6NXE6 501 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 RNF113BQ8IZP6 322 aaKnown RBP17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 VWA5B2Q8N398 1253 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 AVL9Q8NBF6 648 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 HOXB13Q92826 284 aaPredicted RBP17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 ORAI3Q9BRQ5 295 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 V9GYH0 126 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 USP34Q70CQ2 3546 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 IQCMA0A1B0GVH7 501 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 PTTG1O95997 202 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 AK1P00568 194 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 IFI6P09912 130 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 IFI30P13284 250 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 S1PR1P21453 382 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 TBXA2RP21731 343 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 BMP8BP34820 402 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 RFX3P48380 749 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 FABP5Q01469 135 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 HNRNPA0Q13151 305 aaKnown RBP17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 CRTC2Q53ET0 693 aaPredicted RBP17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 B3GLCTQ6Y288 498 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 QSOX2Q6ZRP7 698 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 CXXC5Q7LFL8 322 aaKnown RBP17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 FAM160A2Q8N612 972 aaPredicted RBP17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 SYT14Q8NB59 555 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 FANK1Q8TC84 345 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 CD180Q99467 661 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 LRRC61Q9BV99 259 aa17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 PLEKHB1Q9UF11 243 aaPredicted RBP17.17■□□□□ 0.34
PRPF40B-208ENST00000548436 TGFBR3LH3BV60 316 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 BHLHE40O14503 412 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 OR10H2O60403 315 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 FMO6PO60774 539 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 IGHA1P01876 353 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 SDC2P34741 201 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 PSG6Q00889 435 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 RUNX1T1Q06455 604 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 DBPQ10586 325 aaPredicted RBP17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 DSG2Q14126 1118 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 ZMAT1Q5H9K5 638 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 GDPD3Q7L5L3 318 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 MCATQ8IVS2 390 aaKnown RBP17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 C19orf47Q8N9M1 422 aaKnown RBP17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 RLN3Q8WXF3 142 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 CNOT9Q92600 299 aaKnown RBP17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 OTULINQ96BN8 352 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 HS6ST2Q96MM7 605 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 KCTD7Q96MP8 289 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 CCDC32Q9BV29 185 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 TRAPPC4Q9Y296 219 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 A0A0A6YYC8 382 aaPredicted RBP17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 A0A1W2PPC4 97 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 SLC9B1P1A6NJY1 282 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 I3L1I5 382 aaPredicted RBP17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 SLC30A4O14863 429 aa17.16■□□□□ 0.34
PRPF40B-208ENST00000548436 AQP9O43315 295 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms