RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 IGHV1-2P23083 117 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 PTAFRP25105 342 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 PTX3P26022 381 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 SERPINB1P30740 379 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 SSTR1P30872 391 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 APOBEC3AP31941 199 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 TAS2R39P59534 338 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 GPX6P59796 221 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 FOXL1Q12952 345 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 GTF2IRD2BQ6EKJ0 949 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 GTF2IRD2Q86UP8 949 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 TCAIMQ8N3R3 496 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 ZNF775Q96BV0 537 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 CPNE1Q99829 537 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 C1QTNF5Q9BXJ0 243 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 SRXN1Q9BYN0 137 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 CDC42EP4Q9H3Q1 356 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 UNKLQ9H9P5 680 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 PLAC1Q9HBJ0 212 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 LPAR2Q9HBW0 351 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 MYNNQ9NPC7 610 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 PAQR5Q9NXK6 330 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 NINJ2Q9NZG7 142 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 USP22Q9UPT9 525 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 SPEF1Q9Y4P9 236 aa13.49□□□□□ -0.25
CLSTN3-216ENST00000545663 OR5H1A6NKK0 313 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 FAM159BA6NKW6 160 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 HKR1P10072 659 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 SHC1P29353 583 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 GP5P40197 560 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 PIK3CBP42338 1070 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 CARD18P57730 90 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 VSNL1P62760 191 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 OR4D1Q15615 310 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 SULT1C3Q6IMI6 304 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 SHQ1Q6PI26 577 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 C1orf229Q6ZS94 237 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 SLC44A2Q8IWA5 706 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 CTAGE3PQ8IX95 158 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 FAM110BQ8TC76 370 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 JMJD8Q96S16 334 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 SLC6A7Q99884 636 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 PARD6BQ9BYG5 372 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 CD244Q9BZW8 370 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 ACSS3Q9H6R3 686 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 RRAGDQ9NQL2 400 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 SDHAF3Q9NRP4 125 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 HIF1ANQ9NWT6 349 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 CD274Q9NZQ7 290 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 PTGDR2Q9Y5Y4 395 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 PSAT1Q9Y617 370 aa13.48□□□□□ -0.25
CLSTN3-216ENST00000545663 YES1P07947 543 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 PCMT1P22061 227 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 PSMA4P25789 261 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 GIFP27352 417 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 SPRP35270 261 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 UBA52P62987 128 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 ZNF239Q16600 458 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 GRTP1Q5TC63 336 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 GRHL2Q6ISB3 625 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 TRMT10BQ6PF06 316 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 ESPNLQ6ZVH7 1005 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 CCDC91Q7Z6B0 441 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 TBC1D1Q86TI0 1168 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 GLCCI1Q86VQ1 547 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 NUDT13Q86X67 352 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 MYLK4Q86YV6 388 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 TAF15Q92804 592 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 VSTM2LQ96N03 204 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 KLHDC3Q9BQ90 382 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 RHOJQ9H4E5 214 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 MED29Q9NX70 200 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 STOML1Q9UBI4 398 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 SLC25A15Q9Y619 301 aa13.47□□□□□ -0.25
CLSTN3-216ENST00000545663 AVPP01185 164 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 KLK1P06870 262 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 CSNK2A2P19784 350 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 PGCP20142 388 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 OR3A2P47893 321 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 SERPINB9P50453 376 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 ARFIP1P53367 373 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 RAC1P63000 192 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 PHC1P78364 1004 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 SCGB2A2Q13296 93 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 MLC1Q15049 377 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 RNPS1Q15287 305 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 SLC48A1Q6P1K1 146 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 KLHL17Q6TDP4 642 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 APOOLQ6UXV4 268 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 P2RY8Q86VZ1 359 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 C1QL4Q86Z23 238 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 ZNF433Q8N7K0 673 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 SLC9A6Q92581 669 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 EXT2Q93063 718 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 ZBTB8AQ96BR9 441 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 TSPAN17Q96FV3 270 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 RNF145Q96MT1 663 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 TXLNGYQ9BZA5 131 aa13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 MYOZ1Q9NP98 299 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-216ENST00000545663 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms