RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ZNF474Q6S9Z5 364 aaPredicted RBP11.79□□□□□ -0.52
RTN3-213ENST00000543552 APOOLQ6UXV4 268 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 ESPNLQ6ZVH7 1005 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 MTERF4Q7Z6M4 381 aaKnown RBP11.79□□□□□ -0.52
RTN3-213ENST00000543552 GTF2IRD2Q86UP8 949 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 GGNQ86UU5 652 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 TRABD2AQ86V40 505 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 LRRN4CLQ8ND94 238 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 OR56A1Q8NGH5 318 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 OR4C3Q8NH37 302 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 FAM110BQ8TC76 370 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 MOAP1Q96BY2 351 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 GIMAP5Q96F15 307 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 WFIKKN1Q96NZ8 548 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 PIP5K1AQ99755 562 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 HOXD1Q9GZZ0 328 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 L2HGDHQ9H9P8 463 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 GIN1Q9NXP7 522 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 LGALS13Q9UHV8 139 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 ATP6V1HQ9UI12 483 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 FAF1Q9UNN5 650 aaPredicted RBP11.79□□□□□ -0.52
RTN3-213ENST00000543552 SNX8Q9Y5X2 465 aa11.79□□□□□ -0.52
RTN3-213ENST00000543552 GJE1A6NN92 205 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 TMEM233B4DJY2 109 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 CGAP01215 116 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 HMGN2P05204 90 aaKnown RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 PABPC4LP0CB38 370 aaKnown RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 PRPS1L1P21108 318 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 ELK4P28324 431 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 MAD2L1Q13257 205 aaPredicted RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 GUSBP1Q15486 140 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 PLPPR5Q32ZL2 321 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 SPDYE7PQ495Y7 208 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 XKR7Q5GH72 579 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 BHLHB9Q6PI77 547 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 C20orf204Q6ZNR8 217 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 GALNT10Q86SR1 603 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 BIVMQ86UB2 503 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 ZNF610Q8N9Z0 462 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 GATSQ8NAP1 163 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 FNDC5Q8NAU1 212 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 OR10D3Q8NH80 312 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 OR2V1Q8NHB1 315 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 B4GALNT2Q8NHY0 566 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 AGR3Q8TD06 166 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 OR5P2Q8WZ92 322 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 FAM120BQ96EK7 910 aaKnown RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 PIK3IP1Q96FE7 263 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 SH3YL1Q96HL8 342 aaPredicted RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 REXO5Q96IC2 774 aaKnown RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 RNF145Q96MT1 663 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 ROPN1BQ9BZX4 212 aaPredicted RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 PIGUQ9H490 435 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 ROPN1Q9HAT0 212 aaPredicted RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 TIGARQ9NQ88 270 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 DLL4Q9NR61 685 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 MED17Q9NVC6 651 aa11.78□□□□□ -0.52
RTN3-213ENST00000543552 C6orf203Q9P0P8 240 aaPredicted RBP11.78□□□□□ -0.52
RTN3-213ENST00000543552 FAM171A2A8MVW0 826 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 DEFB108AA8MXU0 73 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 SHISA8B8ZZ34 492 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 ADAMDEC1O15204 470 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 SMPD2O60906 423 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 SS18L1O75177 396 aaPredicted RBP11.77□□□□□ -0.53
RTN3-213ENST00000543552 PEX11AO75192 247 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 AQP8O94778 261 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 NUDT14O95848 222 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 HOXC12P31275 282 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 CCKARP32238 428 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 CCT3P49368 545 aaKnown RBP11.77□□□□□ -0.53
RTN3-213ENST00000543552 SUMO3P55854 103 aaPredicted RBP11.77□□□□□ -0.53
RTN3-213ENST00000543552 NKX6-1P78426 367 aaPredicted RBP11.77□□□□□ -0.53
RTN3-213ENST00000543552 TP53BP2Q13625 1128 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 LASP1Q14847 261 aaKnown RBP11.77□□□□□ -0.53
RTN3-213ENST00000543552 EXOC3L2Q2M3D2 409 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 UGT3A2Q3SY77 523 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 HBMQ6B0K9 141 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 CDC73Q6P1J9 531 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 P3H2Q8IVL5 708 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 LRRC75A-AS1Q8N1F1 130 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 PSMA8Q8TAA3 256 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 SFXN5Q8TD22 340 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 ADAMTS15Q8TE58 950 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 ARL8AQ96BM9 186 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 C16orf58Q96GQ5 468 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 MECRQ9BV79 373 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 ACTRT3Q9BYD9 372 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 KLHL4Q9C0H6 718 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 PLSCR4Q9NRQ2 329 aa11.77□□□□□ -0.53
RTN3-213ENST00000543552 TNFSF11O14788 317 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 CXCL13O43927 109 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 TUBBP07437 444 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 IL11P20809 199 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 EFNA1P20827 205 aaPredicted RBP11.76□□□□□ -0.53
RTN3-213ENST00000543552 ADH6P28332 368 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 ADSLP30566 484 aaPredicted RBP11.76□□□□□ -0.53
RTN3-213ENST00000543552 NR1H2P55055 460 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 ACKR1Q16570 336 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 EXOSC6Q5RKV6 272 aaKnown RBP11.76□□□□□ -0.53
RTN3-213ENST00000543552 CCNJQ5T5M9 372 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms