RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ANKFN1Q8N957 763 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 Q8NA96 180 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 PHOSPHO1Q8TCT1 267 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 WDR60Q8WVS4 1066 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 NR4A3Q92570 626 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 JSRP1Q96MG2 331 aaPredicted RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 BARD1Q99728 777 aaKnown RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 ACKR4Q9NPB9 350 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 EXOSC3Q9NQT5 275 aaKnown RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 DEPPQ9NTK1 212 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 KLHL28Q9NXS3 571 aa16■□□□□ 0.15
CLSTN3-210ENST00000540931 TUBA8Q9NY65 449 aaPredicted RBP16■□□□□ 0.15
CLSTN3-210ENST00000540931 ELOVL7A1L3X0 281 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 ZNF264O43296 627 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 SCO2O43819 266 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 HCN1O60741 890 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 UBL4AP11441 157 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 RPS4Y1P22090 263 aaKnown RBP15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 PTGDSP41222 190 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC6A8P48029 635 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 GAS1P54826 345 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 RBPJQ06330 500 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 FUT5Q11128 374 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 FGFBP1Q14512 234 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 DNAL1Q4LDG9 190 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 RABL3Q5HYI8 236 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 ZNF614Q8N883 585 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 OR52P1PQ8NH57 321 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 CPT1CQ8TCG5 803 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC26A7Q8TE54 656 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 DUSP19Q8WTR2 217 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 ZNF583Q96ND8 569 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC39A3Q9BRY0 314 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 HES7Q9BYE0 225 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 LAT2Q9GZY6 243 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 ALG2Q9H553 416 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 IKZF5Q9H5V7 419 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 ZDHHC11Q9H8X9 412 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 PROK2Q9HC23 129 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 TMEM181Q9P2C4 612 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC13A4Q9UKG4 626 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 C15orf41Q9Y2V0 281 aa15.99■□□□□ 0.15
CLSTN3-210ENST00000540931 EBAG9O00559 213 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 SUSD5O60279 629 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 CBX6O95503 412 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 CSTAP01040 98 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 CHRM4P08173 479 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 EDN3P14138 238 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 SRD5A2P31213 254 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 PRKAR1BP31321 381 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 EIF1P41567 113 aaKnown RBP15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 P2RX1P51575 399 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 SLC7A2P52569 658 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 ADRM1Q16186 407 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 PDZK1Q5T2W1 519 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 RNF220Q5VTB9 566 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 CCDC80Q76M96 950 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 MARCH3Q86UD3 253 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 GRAMD2AQ8IUY3 354 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 GHDCQ8N2G8 530 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 CISD2Q8N5K1 135 aaKnown RBP15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 B4GALNT2Q8NHY0 566 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 NFKBIDQ8NI38 313 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 SNRNP40Q96DI7 357 aaKnown RBP15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 RNF145Q96MT1 663 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 COL12A1Q99715 3063 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 GALNT9Q9HCQ5 603 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 FBXO34Q9NWN3 711 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 ADA2Q9NZK5 511 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 SEC14L3Q9UDX4 400 aa15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 PRPF19Q9UMS4 504 aaKnown RBP15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 GPC6Q9Y625 555 aaPredicted RBP15.98■□□□□ 0.15
CLSTN3-210ENST00000540931 PRAMEF27A3QJZ7 478 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 GSTA4O15217 222 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 HCRTR2O43614 444 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 HPNP05981 417 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 C8BP07358 591 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 PABPC4LP0CB38 370 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 FKBP2P26885 142 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 GDF1P27539 372 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 ZNF41P51814 821 aaPredicted RBP15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 CBX1P83916 185 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 LIPEQ05469 1076 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 CBFBQ13951 182 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 SF3B4Q15427 424 aaKnown RBP eCLIP15.97■□□□□ 0.152e-6■■■■■ 28.8
CLSTN3-210ENST00000540931 ZNF311Q5JNZ3 666 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 ARHGAP11AQ6P4F7 1023 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 ZNF550Q7Z398 422 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 PTOV1Q86YD1 416 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 ZZZ3Q8IYH5 903 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 MICU2Q8IYU8 434 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 FADS6Q8N9I5 356 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 WDSUB1Q8N9V3 476 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 TMEM234Q8WY98 164 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 LZICQ8WZA0 190 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 MAL2Q969L2 176 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 ZBTB8AQ96BR9 441 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 KCTD14Q9BQ13 255 aaPredicted RBP15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 UBQLN3Q9H347 655 aa15.97■□□□□ 0.15
CLSTN3-210ENST00000540931 MUC13Q9H3R2 512 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms