RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SDR39U1Q9NRG7 319 aaPredicted RBP12.82□□□□□ -0.36
USP28-209ENST00000540925 JKAMPQ9P055 326 aa12.82□□□□□ -0.36
USP28-209ENST00000540925 A0A087WZY1 265 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 C9JVG2 144 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 H0Y3Z8 333 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 SYT5O00445 386 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 OIP5O43482 229 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 SASH3O75995 380 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 RCBTB2O95199 551 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 IL18BPO95998 194 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 IL2RAP01589 272 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 PGRP06401 933 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 PEPDP12955 493 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 IDO1P14902 403 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 ZNF17P17021 662 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 MATN1P21941 496 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 TCEA1P23193 301 aaKnown RBP12.81□□□□□ -0.36
USP28-209ENST00000540925 S100A3P33764 101 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 SOAT1P35610 550 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 MRPL19P49406 292 aaKnown RBP12.81□□□□□ -0.36
USP28-209ENST00000540925 DGKQP52824 942 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 SUCLG1P53597 346 aaKnown RBP12.81□□□□□ -0.36
USP28-209ENST00000540925 ATP12AP54707 1039 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 NME5P56597 212 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 FUT5Q11128 374 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 RCAN2Q14206 197 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 PLPPR5Q32ZL2 321 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 ARHGAP11BQ3KRB8 267 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 RAET1LQ5VY80 246 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 EPGNQ6UW88 154 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 MEX3BQ6ZN04 569 aaKnown RBP12.81□□□□□ -0.36
USP28-209ENST00000540925 GDF7Q7Z4P5 450 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 MTERF4Q7Z6M4 381 aaKnown RBP12.81□□□□□ -0.36
USP28-209ENST00000540925 GGNQ86UU5 652 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 GTPBP8Q8N3Z3 284 aaPredicted RBP12.81□□□□□ -0.36
USP28-209ENST00000540925 GATSQ8NAP1 163 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 GLB1L3Q8NCI6 653 aaPredicted RBP12.81□□□□□ -0.36
USP28-209ENST00000540925 VPS37AQ8NEZ2 397 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 ZFP3Q96NJ6 502 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 NPAS1Q99742 590 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 PIGQQ9BRB3 760 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 NMUR2Q9GZQ4 415 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 ZNF350Q9GZX5 532 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 RUBCNLQ9H714 662 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 SLCO1B3Q9NPD5 702 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 KCNE5Q9UJ90 142 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 ICAM5Q9UMF0 924 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 USH1CQ9Y6N9 552 aa12.81□□□□□ -0.36
USP28-209ENST00000540925 ANKHD1Q8IWZ3 2542 aaKnown RBP12.8□□□□□ -0.36
USP28-209ENST00000540925 NPIPA5A0A0B4J1W7 369 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 PRAMEF27A3QJZ7 478 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 DUXAA6NLW8 204 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 HMGB1P1B2RPK0 211 aaPredicted RBP12.8□□□□□ -0.36
USP28-209ENST00000540925 NPIPA7E9PJI5 369 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 H0YC42 278 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 SCDO00767 359 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 DVL2O14641 736 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 FCMRO60667 390 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 DNAJA2O60884 412 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 TGM6O95932 706 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 AK1P00568 194 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 LINGO3P0C6S8 592 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 NPIPA8P0DM63 369 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 BMP5P22003 454 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 CTSSP25774 331 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 TPD52P55327 224 aaPredicted RBP12.8□□□□□ -0.36
USP28-209ENST00000540925 CLDN20P56880 219 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 ZNF117Q03924 483 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 SRYQ05066 204 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 ZNF141Q15928 474 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 GSTA3Q16772 222 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 PLXDC2Q6UX71 529 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 METTL25Q8N6Q8 603 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 OR5M1Q8NGP8 315 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 POC1BQ8TC44 478 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 ADGRG7Q96K78 797 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 SLC35G5Q96KT7 338 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 TM9SF2Q99805 663 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 SAP130Q9H0E3 1048 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 OR51I1Q9H343 314 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 MED17Q9NVC6 651 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 ZIM2Q9NZV7 527 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 PCDHGB4Q9UN71 923 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 L3MBTL1Q9Y468 752 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 AP4B1Q9Y6B7 739 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 MED12LQ86YW9 2145 aa12.8□□□□□ -0.36
USP28-209ENST00000540925 HRNRQ86YZ3 2850 aaPredicted RBP12.79□□□□□ -0.36
USP28-209ENST00000540925 ITPR3Q14573 2671 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 CENPVL1A0A0U1RR11 272 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 SHISA8B8ZZ34 492 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 ETV2O00321 342 aaPredicted RBP12.79□□□□□ -0.36
USP28-209ENST00000540925 TNFRSF21O75509 655 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 TGDSO95455 350 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 NTN1O95631 604 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 CPSF4O95639 269 aaKnown RBP12.79□□□□□ -0.36
USP28-209ENST00000540925 POU3F2P20265 443 aaPredicted RBP12.79□□□□□ -0.36
USP28-209ENST00000540925 ATP6V1C1P21283 382 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 SSTR2P30874 369 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 CDKN2CP42773 168 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 ASCL1P50553 236 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms