RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FAM174BQ3ZCQ3 159 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 FBXL19-AS1Q494R0 122 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 BHLHB9Q6PI77 547 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 MAVSQ7Z434 540 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 MISPQ8IVT2 679 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 MEIOBQ8N635 442 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 GOT1L1Q8NHS2 421 aaPredicted RBP13.35□□□□□ -0.27
USP28-204ENST00000537642 ZNF75CPQ92670 426 aaPredicted RBP13.35□□□□□ -0.27
USP28-204ENST00000537642 SH3YL1Q96HL8 342 aaPredicted RBP13.35□□□□□ -0.27
USP28-204ENST00000537642 MAELQ96JY0 434 aaKnown RBP13.35□□□□□ -0.27
USP28-204ENST00000537642 SLC35G5Q96KT7 338 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 NPAS1Q99742 590 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 TM9SF2Q99805 663 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 HHATLQ9HCP6 504 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 PCDHGB4Q9UN71 923 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 L3MBTL1Q9Y468 752 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 GPR45Q9Y5Y3 372 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 AKAP9Q99996 3911 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 MPDZO75970 2070 aa13.35□□□□□ -0.27
USP28-204ENST00000537642 HEATR5AQ86XA9 2040 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 PDZD2O15018 2839 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 A0A087WZY1 265 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 C9JVG2 144 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 NPIPB9F8W1W9 429 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 ZNF195O14628 629 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 TGM6O95932 706 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 UQCRC2P22695 453 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 UQCRC1P31930 480 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 S100A3P33764 101 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 OPRM1P35372 400 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 RNF144AP50876 292 aaPredicted RBP13.34□□□□□ -0.27
USP28-204ENST00000537642 CASP9P55211 416 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 CLDN20P56880 219 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 SNTB1Q13884 538 aaKnown RBP13.34□□□□□ -0.27
USP28-204ENST00000537642 PLPPR5Q32ZL2 321 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 FLYWCH1Q4VC44 716 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 SLC9B1Q4ZJI4 515 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 KLHL26Q53HC5 615 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 TTMPQ5BVD1 217 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP28-204ENST00000537642 GRAMD2AQ8IUY3 354 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 GCNT2Q8N0V5 402 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 CHDHQ8NE62 594 aaPredicted RBP13.34□□□□□ -0.27
USP28-204ENST00000537642 VPS37AQ8NEZ2 397 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 B4GALNT2Q8NHY0 566 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 MIPOL1Q8TD10 442 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 ACTRT2Q8TDY3 377 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 RNASE6Q93091 150 aaKnown RBP13.34□□□□□ -0.27
USP28-204ENST00000537642 INTS12Q96CB8 462 aaKnown RBP13.34□□□□□ -0.27
USP28-204ENST00000537642 ZFP3Q96NJ6 502 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 SDF2Q99470 211 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 HOXD1Q9GZZ0 328 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 MCCC2Q9HCC0 563 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 MED17Q9NVC6 651 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 JKAMPQ9P055 326 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 KCNN3Q9UGI6 736 aa13.34□□□□□ -0.27
USP28-204ENST00000537642 ANKHD1Q8IWZ3 2542 aaKnown RBP13.33□□□□□ -0.28
USP28-204ENST00000537642 DUXAA6NLW8 204 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 SEC14L5O43304 696 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 OIP5O43482 229 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 C1QCP02747 245 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 ZNF17P17021 662 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 PSMA4P25789 261 aaKnown RBP13.33□□□□□ -0.28
USP28-204ENST00000537642 ATP12AP54707 1039 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 ZNF117Q03924 483 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 SAXO2Q658L1 398 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 NXNQ6DKJ4 435 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 CHMP1BQ7LBR1 199 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 OLIG3Q7RTU3 272 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 MTERF4Q7Z6M4 381 aaKnown RBP13.33□□□□□ -0.28
USP28-204ENST00000537642 GGNQ86UU5 652 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 GTPBP8Q8N3Z3 284 aaPredicted RBP13.33□□□□□ -0.28
USP28-204ENST00000537642 ZNF527Q8NB42 609 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 POC1BQ8TC44 478 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 PIWIL2Q8TC59 973 aaKnown RBP13.33□□□□□ -0.28
USP28-204ENST00000537642 PHOSPHO1Q8TCT1 267 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 SMPDL3BQ92485 455 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 FIG4Q92562 907 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 MARK4Q96L34 752 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 ATP6V1G3Q96LB4 118 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 CCDC115Q96NT0 180 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 SFXN3Q9BWM7 321 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 OR51I1Q9H343 314 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 BTNL2Q9UIR0 455 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 AP4B1Q9Y6B7 739 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 POLQO75417 2590 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 MYO9AB2RTY4 2548 aa13.33□□□□□ -0.28
USP28-204ENST00000537642 C7orf72A4D263 438 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 SLC22A20A6NK97 555 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 EEF1E1-BLOC1S5C9J1V9 151 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 EEF1E1O43324 174 aaKnown RBP13.32□□□□□ -0.28
USP28-204ENST00000537642 TNFRSF21O75509 655 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 LINGO3P0C6S8 592 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 OR12D1P0DN82 309 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 ZNF41P51814 821 aaPredicted RBP13.32□□□□□ -0.28
USP28-204ENST00000537642 EEFSECP57772 596 aaKnown RBP13.32□□□□□ -0.28
USP28-204ENST00000537642 MYBPHQ13203 477 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 ARHGAP11BQ3KRB8 267 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 HEPHL1Q6MZM0 1159 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 TNFAIP8L2Q6P589 184 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms