RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 ZNF829Q3KNS6 432 aaPredicted RBP4.94□□□□□ -1.62
PCF11-202ENST00000528336 IL23RQ5VWK5 629 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 NIPAL3Q6P499 406 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 SLC39A4Q6P5W5 647 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 SCARA5Q6ZMJ2 495 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 KDM7AQ6ZMT4 941 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 ZNF600Q6ZNG1 722 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 ERASQ7Z444 233 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 UBQLNLQ8IYU4 475 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 PYROXD2Q8N2H3 581 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 ZNF565Q8N9K5 539 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 DNAAF3Q8N9W5 541 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 PDCD6IPQ8WUM4 868 aaKnown RBP4.94□□□□□ -1.62
PCF11-202ENST00000528336 GATAD1Q8WUU5 269 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 CDKL2Q92772 493 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 GGHQ92820 318 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 P2RX5Q93086 422 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 SGK3Q96BR1 496 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 PYCR2Q96C36 320 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 C18orf12Q96KH6 178 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 NDNQ99608 321 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 CITED1Q99966 193 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 CUEDC2Q9H467 287 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 DPEP3Q9H4B8 488 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 AZI2Q9H6S1 392 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 SDHAF3Q9NRP4 125 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 CHMP5Q9NZZ3 219 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 VPS54Q9P1Q0 977 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 STX18Q9P2W9 335 aaKnown RBP4.94□□□□□ -1.62
PCF11-202ENST00000528336 ASIC3Q9UHC3 531 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 ARID2Q68CP9 1835 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 UBN2Q6ZU65 1347 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 SH3TC1Q8TE82 1336 aa4.94□□□□□ -1.62
PCF11-202ENST00000528336 TRAV26-1A0A087WT03 109 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 A0A087WUV0 522 aaPredicted RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 CYSRT1A8MQ03 144 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 PSMD3O43242 534 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 UFL1O94874 794 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 KLHL2O95198 593 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 MOCS2O96007 188 aaPredicted RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 APOA1P02647 267 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 CLTAP09496 248 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 ZSCAN5DPP0CG00 497 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 PNMTP11086 282 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 MX1P20591 662 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 CYP3A5P20815 502 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 HOXA6P31267 233 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 PRDX2P32119 198 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 SOX3P41225 446 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 RPS15P62841 145 aaKnown RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 ZNF177Q13360 481 aaPredicted RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 CARTPTQ16568 116 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 ACKR1Q16570 336 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 SUSD4Q5VX71 490 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 ASPHD2Q6ICH7 369 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 ZNF770Q6IQ21 691 aaPredicted RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 PRR5LQ6MZQ0 368 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 LEKR1Q6ZMV7 388 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 C10orf71Q711Q0 1435 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 AMIGO1Q86WK6 493 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 ANKFN1Q8N957 763 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 LRTM2Q8N967 370 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 ZNF519Q8TB69 540 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 TRMT10AQ8TBZ6 339 aaKnown RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 CIDECQ96AQ7 238 aaPredicted RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 MOCOSQ96EN8 888 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 PRRC1Q96M27 445 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 CASD1Q96PB1 797 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 NPAS2Q99743 824 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 CHRDL1Q9BU40 450 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 IDI2Q9BXS1 227 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 FGFBP2Q9BYJ0 223 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 API5Q9BZZ5 524 aaKnown RBP4.93□□□□□ -1.62
PCF11-202ENST00000528336 SDCBP2Q9H190 292 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 BLZF1Q9H2G9 400 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 RGCCQ9H4X1 137 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 ACTL8Q9H568 366 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 TMEM185BQ9H7F4 350 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 MEAF6Q9HAF1 191 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 SGK2Q9HBY8 427 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 NRBP2Q9NSY0 501 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 PKD2L2Q9NZM6 624 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 B9D1Q9UPM9 204 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 IFT52Q9Y366 437 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 PXDNLA1KZ92 1463 aa4.93□□□□□ -1.62
PCF11-202ENST00000528336 RIC1Q4ADV7 1423 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 ANTXRLA6NF34 631 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 VGLL3A8MV65 326 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 HAS3O00219 553 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 CLPXO76031 633 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 GAS8O95995 478 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 IGKV5-2P06315 115 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 PRKACGP22612 351 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 TUBG1P23258 451 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 SFTPDP35247 375 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 TRIM23P36406 574 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 PTGFRP43088 359 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 TNFRSF4P43489 277 aa4.92□□□□□ -1.62
PCF11-202ENST00000528336 RAB9AP51151 201 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms