RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FUT4P22083 530 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 DAPP51397 102 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 RAD23AP54725 363 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 MERTKQ12866 999 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 EPS8Q12929 822 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 MED21Q13503 144 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 DGCR6Q14129 220 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 RFX4Q33E94 735 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 TMPRSS7Q7RTY8 843 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 TSPYL5Q86VY4 417 aaPredicted RBP19.34■□□□□ 0.69
VPS28-208ENST00000527797 DHRSXQ8N5I4 330 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 SLC35B4Q969S0 331 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 ZNF570Q96NI8 536 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 ADI1Q9BV57 179 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 MMP25Q9NPA2 562 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 DNAJB12Q9NXW2 375 aaKnown RBP19.34■□□□□ 0.69
VPS28-208ENST00000527797 FLRT3Q9NZU0 649 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 TESQ9UGI8 421 aaKnown RBP19.34■□□□□ 0.69
VPS28-208ENST00000527797 SLC35A3Q9Y2D2 325 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 TRBV4-1A0A0J9YWV2 114 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 TMEM200CA6NKL6 621 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 FAAHO00519 579 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 TERTO14746 1132 aaKnown RBP19.33■□□□□ 0.69
VPS28-208ENST00000527797 ICOSLGO75144 302 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 BCAS1O75363 584 aaPredicted RBP19.33■□□□□ 0.69
VPS28-208ENST00000527797 OR5F1O95221 314 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 CSTAP01040 98 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 ANXA8P13928 327 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 IGFBP5P24593 272 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 ELAVL4P26378 380 aaKnown RBP19.33■□□□□ 0.69
VPS28-208ENST00000527797 ADH7P40394 386 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 PLAURQ03405 335 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 ST3GAL3Q11203 375 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 KDM4DQ6B0I6 523 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 FAHD1Q6P587 224 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 C16orf47Q6ZP98 133 aaPredicted RBP19.33■□□□□ 0.69
VPS28-208ENST00000527797 ZNF550Q7Z398 422 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 ADAMTS16Q8TE57 1224 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 TFAP2CQ92754 450 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 MYOTQ9UBF9 498 aa19.33■□□□□ 0.69
VPS28-208ENST00000527797 TMEFF2Q9UIK5 374 aaPredicted RBP19.33■□□□□ 0.69
VPS28-208ENST00000527797 CDV3Q9UKY7 258 aaKnown RBP19.33■□□□□ 0.69
VPS28-208ENST00000527797 CCDC88CQ9P219 2028 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 ARRDC5A6NEK1 342 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 OR6C70A6NIJ9 312 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 CYP7B1O75881 506 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 NGFRP08138 427 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 PRG2P13727 222 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 ZIK1Q3SY52 487 aaPredicted RBP19.33■□□□□ 0.68
VPS28-208ENST00000527797 SLC5A8Q8N695 610 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 FEVQ99581 238 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 PSD2Q9BQI7 771 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 ZNF559Q9BR84 538 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 ZBTB20Q9HC78 741 aaPredicted RBP19.33■□□□□ 0.68
VPS28-208ENST00000527797 ZNF160Q9HCG1 818 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 DLL3Q9NYJ7 618 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 NTNG1Q9Y2I2 539 aa19.33■□□□□ 0.68
VPS28-208ENST00000527797 LOC101059948A0A1B0GTJ6 334 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 CDRT15L2A8MXV6 281 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 H3BNH8 94 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 UGT2B11O75310 529 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 PPM1BO75688 479 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 UBTFL6P0CB48 400 aaPredicted RBP19.32■□□□□ 0.68
VPS28-208ENST00000527797 NAGAP17050 411 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 F8A1P23610 371 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 EFR3AQ14156 821 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 TRAM2Q15035 370 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 ZNF440Q8IYI8 595 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 SLC22A8Q8TCC7 542 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 CYGBQ8WWM9 190 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 SLC41A3Q96GZ6 507 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 FUZQ9BT04 418 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 TOR3AQ9H497 397 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 ANKRD19PQ9H560 264 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 KRT84Q9NSB2 600 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 MAN2C1Q9NTJ4 1040 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 PCDHGA6Q9Y5G7 932 aa19.32■□□□□ 0.68
VPS28-208ENST00000527797 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.31■□□□□ 0.68
VPS28-208ENST00000527797 NADKO95544 446 aaPredicted RBP19.31■□□□□ 0.68
VPS28-208ENST00000527797 HPP00738 406 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 ICAM2P13598 275 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 CDH2P19022 906 aaPredicted RBP19.31■□□□□ 0.68
VPS28-208ENST00000527797 CAPGP40121 348 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 IL1RL1Q01638 556 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 OR1Q1Q15612 314 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 SLC36A3Q495N2 470 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 FNDC7Q5VTL7 733 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 DESI1Q6ICB0 168 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 PODNL1Q6PEZ8 512 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 LINC00471Q8N535 108 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 PHOSPHO1Q8TCT1 267 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 SLC7A13Q8TCU3 470 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 NKD1Q969G9 470 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 SLC38A4Q969I6 547 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 ZNF556Q9HAH1 456 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 TMEM27Q9HBJ8 222 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 SPEGQ15772 3267 aa19.31■□□□□ 0.68
VPS28-208ENST00000527797 A0A1W2PQD3 144 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 SH3PXD2BA1X283 911 aa19.3■□□□□ 0.68
VPS28-208ENST00000527797 TRAPPC13A5PLN9 417 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms