RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 DPH1Q9BZG8 443 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 C11orf54Q9H0W9 315 aaPredicted RBP19.74■□□□□ 0.75
VPS28-205ENST00000526204 FBXL21Q9UKT6 434 aa19.74■□□□□ 0.75
VPS28-205ENST00000526204 RBMX2Q9Y388 322 aaKnown RBP19.74■□□□□ 0.75
VPS28-205ENST00000526204 CENPVL1A0A0U1RR11 272 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 H0Y8X5 98 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 RCBTB2O95199 551 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 RASGRP1O95267 797 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 KLF8O95600 359 aaPredicted RBP19.73■□□□□ 0.75
VPS28-205ENST00000526204 IFI6P09912 130 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 MAPK14Q16539 360 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 ZNF655Q8N720 491 aaPredicted RBP19.73■□□□□ 0.75
VPS28-205ENST00000526204 COX18Q8N8Q8 333 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 OR51G2Q8NGK0 314 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 CAPSLQ8WWF8 208 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 OTULINQ96BN8 352 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 BMFQ96LC9 184 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 ATF6BQ99941 703 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 KCNN2Q9H2S1 579 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 EVA1AQ9H8M9 152 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 TMEM165Q9HC07 324 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 TMEM5Q9Y2B1 443 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 RANBP2P49792 3224 aaKnown RBP19.73■□□□□ 0.75
VPS28-205ENST00000526204 CDHR4A6H8M9 788 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 OR6C74A6NCV1 312 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 LRRC72A6NJI9 287 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 BHLHE40O14503 412 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 DNAJB6O75190 326 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 HLA-DQB1P01920 261 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 CAV3P56539 151 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 MANEAQ5SRI9 462 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 NIPAL3Q6P499 406 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 PLBD1Q6P4A8 553 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 KLBQ86Z14 1044 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 TRIM48Q8IWZ4 208 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 LNX2Q8N448 690 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 SIRT6Q8N6T7 355 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 OR10G6Q8NH81 332 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 SNX18Q96RF0 628 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 PPP1R3EQ9H7J1 279 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 BABAM2Q9NXR7 383 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 ADAM30Q9UKF2 790 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 CA5BQ9Y2D0 317 aa19.73■□□□□ 0.75
VPS28-205ENST00000526204 YBX2Q9Y2T7 364 aaKnown RBP19.73■□□□□ 0.75
VPS28-205ENST00000526204 LOC105369274A0A096LPK9 316 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 LOC102723532A0A0G2JNH3 316 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 FAM183AA6NL82 134 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 GPR75O95800 540 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 PRG2P13727 222 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 HNRNPA2B1P22626 353 aaKnown RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 HTR2AP28223 471 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 COL9A2Q14055 689 aaPredicted RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 GPR18Q14330 331 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 EOGTQ5NDL2 527 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 CNIH2Q6PI25 160 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 OR4N4Q8N0Y3 316 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 DCLRE1CQ96SD1 692 aaKnown RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 POLE3Q9NRF9 147 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 C14orf105Q9NVL8 296 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 PCDHGB7Q9Y5F8 929 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 ENTPD2Q9Y5L3 495 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 N6AMT1Q9Y5N5 214 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 GOLGA4Q13439 2230 aaKnown RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 C5orf42Q9H799 3197 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 FAM86C2PA6NEL3 165 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 H0YGG7 62 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 TFECO14948 347 aaPredicted RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 IDH3BO43837 385 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 SLC2A2P11168 524 aaPredicted RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 IFI30P13284 250 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 EN2P19622 333 aaPredicted RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 NT5EP21589 574 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 EVX1P49640 407 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 ARF3P61204 181 aaPredicted RBP19.72■□□□□ 0.75
VPS28-205ENST00000526204 ID2Q02363 134 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 SF3B4Q15427 424 aaKnown RBP eCLIP19.72■□□□□ 0.756e-8■■■■■ 27
VPS28-205ENST00000526204 TMPRSS11FQ6ZWK6 438 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 C19orf18Q8NEA5 215 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 ST6GAL2Q96JF0 529 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 MMP28Q9H239 520 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 INPP5EQ9NRR6 644 aa19.72■□□□□ 0.75
VPS28-205ENST00000526204 C12orf71A8MTZ7 269 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 B4DXG7 233 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 RGS13O14921 159 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 HPGDSO60760 199 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 RGS9O75916 674 aaPredicted RBP19.71■□□□□ 0.75
VPS28-205ENST00000526204 GKN3PP0CG01 181 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 MAKP20794 623 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 SRP54P61011 504 aaKnown RBP19.71■□□□□ 0.75
VPS28-205ENST00000526204 FZD5Q13467 585 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 RIN1Q13671 783 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 ZFP69Q49AA0 526 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 PRPF38BQ5VTL8 546 aaKnown RBP19.71■□□□□ 0.75
VPS28-205ENST00000526204 TRIQKQ629K1 86 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 VASNQ6EMK4 673 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 WDR88Q6ZMY6 472 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 Q8N402 240 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 ACOT12Q8WYK0 555 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 FRMD6Q96NE9 622 aa19.71■□□□□ 0.75
VPS28-205ENST00000526204 IL21RQ9HBE5 538 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms