RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 KCTD21Q4G0X4 260 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ANKRD20A8PQ5CZ79 823 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 XKR4Q5GH76 650 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 TCP11X2Q5H9J9 407 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 C6orf136Q5SQH8 315 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 C10orf120Q5SQS8 335 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ATAD3BQ5T9A4 648 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 TPGS1Q6ZTW0 290 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ARMCX2Q7L311 632 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 CHST3Q7LGC8 479 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 COX8CQ7Z4L0 72 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 MCOLN2Q8IZK6 566 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 PRSS35Q8N3Z0 413 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 FGFRL1Q8N441 504 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 HDDC3Q8N4P3 179 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 TEX26Q8N6G2 289 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ATP6V0D2Q8N8Y2 350 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 OR8J2Q8NGG1 315 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 OR5M9Q8NGP3 310 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 SLC2A14Q8TDB8 520 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 MCOLN3Q8TDD5 553 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 TCP10LQ8TDR4 215 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 PDCD6IPQ8WUM4 868 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 RAD54LQ92698 747 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 NT5C3BQ969T7 300 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 CCDC43Q96MW1 224 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 GBP5Q96PP8 586 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 IL12RB2Q99665 862 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 SEC22CQ9BRL7 303 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ALKBH7Q9BT30 221 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 PAPOLGQ9BWT3 736 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 C6orf62Q9GZU0 229 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 TMEM245Q9H330 911 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 C5orf66Q9H5L9 145 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 TRIM45Q9H8W5 580 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 PSMC3IPQ9P2W1 217 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 SNX7Q9UNH6 387 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 NSG2Q9Y328 171 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 IFT52Q9Y366 437 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 SAMHD1Q9Y3Z3 626 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 HBS1LQ9Y450 684 aaKnown RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 AFF2P51816 1311 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 MN1Q10571 1320 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 ANKRD36BQ8N2N9 1353 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 BCL9O00512 1426 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 COL16A1Q07092 1604 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 CAMTA1Q9Y6Y1 1673 aa3.07□□□□□ -1.92
CD44-217ENST00000525348 ZNF646O15015 1829 aaPredicted RBP3.07□□□□□ -1.92
CD44-217ENST00000525348 A4D1N5 150 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 NKX6-3A6NJ46 265 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 A8MU76 341 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 KBTBD13C9JR72 458 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 E7ENQ6 273 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 FAM86B1E9PN63 330 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 TOR1AO14656 332 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 SLC22A1O15245 554 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 OGTO15294 1046 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 TM9SF1O15321 606 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 CLOCKO15516 846 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 TNFSF12O43508 249 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 CABYRO75952 493 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 PDE5AO76074 875 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 CDK14O94921 469 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 FAM86B2P0C5J1 330 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 ZCCHC18P0CG32 403 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 STAG3L3P0CL85 134 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 SPP1P10451 314 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 SLC2A3P11169 496 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 MLNP12872 115 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 RPA1P27694 616 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 SSTR1P30872 391 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 MAT2AP31153 395 aaKnown RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 MAGEA4P43358 317 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 CDKN1BP46527 198 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 CDX1P47902 265 aaPredicted RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 CASP4P49662 377 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 GNG10P50151 68 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 HNRNPFP52597 415 aaKnown RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 SUCLG1P53597 346 aaKnown RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 CDH6P55285 790 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 PRDM15P57071 1507 aaPredicted RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 PTENP60484 403 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 GMFBP60983 142 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 ELF3P78545 371 aaPredicted RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 AKAP12Q02952 1782 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 ABRQ12979 859 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 IL24Q13007 206 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 GPM6BQ13491 265 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 CAPRIN1Q14444 709 aaKnown RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 KCNJ8Q15842 424 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 C2orf76Q3KRA6 126 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 DNAL1Q4LDG9 190 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 ANKRD20A4Q4UJ75 823 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 ZNF542PQ5EBM4 170 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 LRRC73Q5JTD7 316 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 TOR1AIP1Q5JTV8 583 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 C1orf146Q5VVC0 180 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 DHX57Q6P158 1386 aaKnown RBP3.06□□□□□ -1.92
CD44-217ENST00000525348 BLOC1S2Q6QNY1 142 aa3.06□□□□□ -1.92
CD44-217ENST00000525348 Q6ZVQ6 151 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms