RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CAPZA2P47755 286 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 EIF2B2P49770 351 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 HHEXQ03014 270 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 ZNF155Q12901 538 aaPredicted RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 AMZ1Q400G9 498 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 FLYWCH1Q4VC44 716 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 DDI2Q5TDH0 399 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 XKRXQ6PP77 449 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 MEPCEQ7L2J0 689 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 PRSS41Q7RTY9 318 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 BMP8AQ7Z5Y6 402 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 OR8H2Q8N162 312 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 VWA5B2Q8N398 1253 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 LNX2Q8N448 690 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 SLC44A3Q8N4M1 653 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 FAM181AQ8N9Y4 354 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 SIMC1Q8NDZ2 872 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 PATE1Q8WXA2 126 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 ASB15Q8WXK1 588 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 HTRA1Q92743 480 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 LMF2Q9BU23 707 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 OR52D1Q9H346 318 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 ERVK13-1Q9NX77 482 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 POLHQ9Y253 713 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 PCDHGB2Q9Y5G2 931 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CDC42EP2O14613 210 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 HCN1O60741 890 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 THEGLP0DJG4 465 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 IFI30P13284 250 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 RNH1P13489 461 aaKnown RBP13.78□□□□□ -0.2
NUP54-217ENST00000514987 PAICSP22234 425 aaKnown RBP13.78□□□□□ -0.2
NUP54-217ENST00000514987 LTBRP36941 435 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 RNF144AP50876 292 aaPredicted RBP13.78□□□□□ -0.2
NUP54-217ENST00000514987 PSMD4P55036 377 aaKnown RBP13.78□□□□□ -0.2
NUP54-217ENST00000514987 RPS25P62851 125 aaKnown RBP13.78□□□□□ -0.2
NUP54-217ENST00000514987 HNRNPA0Q13151 305 aaKnown RBP13.78□□□□□ -0.2
NUP54-217ENST00000514987 FZD2Q14332 565 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 GARNL3Q5VVW2 1013 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 CPOQ8IVL8 374 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 GDPD1Q8N9F7 314 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 TMEM52Q8NDY8 209 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 OR5T3Q8NGG3 340 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 HPS1Q92902 700 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 SDHCQ99643 169 aaPredicted RBP13.78□□□□□ -0.2
NUP54-217ENST00000514987 TRIM2Q9C040 744 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 TMEM74BQ9NUR3 256 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 NPAP1Q9NZP6 1156 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 GRIP1Q9Y3R0 1128 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 V9GYH0 126 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 F5P12259 2224 aa13.78□□□□□ -0.2
NUP54-217ENST00000514987 J3QRE1 110 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 BHLHE40O14503 412 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 MSL3P1P0C860 447 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 PRG2P13727 222 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 CD53P19397 219 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 PTBP1P26599 531 aaKnown RBP eCLIP13.77□□□□□ -0.215e-7■■■■□ 20.9
NUP54-217ENST00000514987 SDC2P34741 201 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 PPP3R1P63098 170 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 EXOSC7Q15024 291 aaKnown RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 TMEM31Q5JXX7 168 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 FIGNL1Q6PIW4 674 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 SMARCD3Q6STE5 483 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 ZNF322Q6U7Q0 402 aaPredicted RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 CCBE1Q6UXH8 406 aaPredicted RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 GDPD3Q7L5L3 318 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 LHFPL3Q86UP9 236 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 C11orf74Q86VG3 221 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 PARGQ86W56 976 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 MCATQ8IVS2 390 aaKnown RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 ZNF595Q8IYB9 648 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 TMEFF1Q8IYR6 380 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 ACBD7Q8N6N7 88 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 C19orf47Q8N9M1 422 aaKnown RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 OR4F15Q8NGB8 312 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 ZDHHC1Q8WTX9 485 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 TMEM203Q969S6 136 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 BPIFA2Q96DR5 249 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 KLHDC7BQ96G42 594 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 ZNF578Q96N58 590 aaPredicted RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 SECISBP2Q96T21 854 aaKnown RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 DPH1Q9BZG8 443 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 TCEAL2Q9H3H9 227 aaPredicted RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 TPK1Q9H3S4 243 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 HINT3Q9NQE9 182 aaKnown RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 CMC2Q9NRP2 79 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 TOR4AQ9NXH8 423 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 PLEKHB1Q9UF11 243 aaPredicted RBP13.77□□□□□ -0.21
NUP54-217ENST00000514987 CSNK1G3Q9Y6M4 447 aa13.77□□□□□ -0.21
NUP54-217ENST00000514987 ARHGEF17Q96PE2 2063 aaPredicted RBP13.76□□□□□ -0.21
NUP54-217ENST00000514987 CENPVL1A0A0U1RR11 272 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 SLC22A31A6NKX4 558 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 SGK494L7N484 410 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 PEX12O00623 359 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 CHP2O43745 196 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 CTNSO60931 367 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 KCNK2O95069 426 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 APOL3O95236 402 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 NTN1O95631 604 aa13.76□□□□□ -0.21
NUP54-217ENST00000514987 CBX7O95931 251 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms