RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SPTA1P02549 2419 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.91□□□□□ -0.5
USP53-209ENST00000514665 DCDC2BA2VCK2 349 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 FAM221BA6H8Z2 402 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 FOXE1O00358 373 aaPredicted RBP11.91□□□□□ -0.5
USP53-209ENST00000514665 AIFM1O95831 613 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 NPPBP16860 134 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 CR2P20023 1033 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 GRK5P34947 590 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 GAB1Q13480 694 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 KCNJ8Q15842 424 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 Q6ZSR6 202 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 UBTD2Q8WUN7 234 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 UBQLN2Q9UHD9 624 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 POU2F3Q9UKI9 436 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 ERVK-19Q9WJR5 959 aa11.91□□□□□ -0.5
USP53-209ENST00000514665 COL22A1Q8NFW1 1626 aaPredicted RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 POLR1CO15160 346 aaPredicted RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 APOC3P02656 99 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 SFTPBP07988 381 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 GLI3P10071 1580 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 RIDAP52758 137 aaKnown RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 DUSP7Q16829 419 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 PGGHGQ32M88 737 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 LRRN1Q6UXK5 716 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 LAX1Q8IWV1 398 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 FAM83FQ8NEG4 500 aaPredicted RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 OR5T2Q8NGG2 359 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 C4orf36Q96KX1 117 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 TM7SF3Q9NS93 570 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 OR6C2Q9NZP2 312 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 LAMB1P07942 1786 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 NCR1O76036 304 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 PROS1P07225 676 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 NR0B1P51843 470 aaKnown RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 MLLT11Q13015 90 aaPredicted RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 GRM7Q14831 915 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 FAM26DQ5JW98 314 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 SCGB3A2Q96PL1 93 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 THAP7Q9BT49 309 aaPredicted RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 SYT4Q9H2B2 425 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 ACSS1Q9NUB1 689 aaPredicted RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 ZNF701Q9NV72 531 aaPredicted RBP11.9□□□□□ -0.5
USP53-209ENST00000514665 BABAM2Q9NXR7 383 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 TAS2R3Q9NYW6 316 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 NAALAD2Q9Y3Q0 740 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 APC2O95996 2303 aa11.9□□□□□ -0.5
USP53-209ENST00000514665 SCN1AP35498 2009 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 KCNJ13O60928 360 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 GABARAPO95166 117 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 MMP12P39900 470 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 CLRN1P58418 232 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 RNASE10Q5GAN6 216 aaKnown RBP11.9□□□□□ -0.51
USP53-209ENST00000514665 DCST2Q5T1A1 773 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 C18orf63Q68DL7 685 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 FAM111BQ6SJ93 734 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 SHISA6Q6ZSJ9 500 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 SLC46A3Q7Z3Q1 461 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 NOXA1Q86UR1 476 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 ZNF619Q8N2I2 560 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 TMIEQ8NEW7 156 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 TMEM163Q8TC26 289 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 PADI2Q9Y2J8 665 aa11.9□□□□□ -0.51
USP53-209ENST00000514665 TEX46H3BTG2 121 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 FBLP22087 321 aaKnown RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 RORAP35398 523 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 ERV3-1Q14264 604 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 LTB4RQ15722 352 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 ZNF750Q32MQ0 723 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 TMEM151BQ8IW70 566 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 DNAJC5GQ8N7S2 189 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 OR5AK2Q8NH90 309 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 RLN3Q8WXF3 142 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 DHRS1Q96LJ7 313 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 OR1F2PQ96R84 312 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 UHRF1Q96T88 793 aaPredicted RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP53-209ENST00000514665 PRELID1Q9Y255 219 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 SIPA1L3O60292 1781 aaPredicted RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 FUCA1P04066 466 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 CFL1P23528 166 aaKnown RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 APEX1P27695 318 aaKnown RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 VAMP2P63027 116 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 TATDN3Q17R31 274 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 ALG10Q5BKT4 473 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 OR6T1Q8NGN1 323 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 SLC25A44Q96H78 314 aaPredicted RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 ADOQ96SZ5 270 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 C1QTNF2Q9BXJ5 285 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 KLHL9Q9P2J3 617 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 B4GALT3O60512 393 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 ABLIM3O94929 683 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 AMY2AP04746 511 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 NR2C1P13056 603 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 GJA4P35212 333 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 FAM189A2Q15884 450 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 NKPD1Q17RQ9 610 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 CTU2Q2VPK5 515 aaKnown RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 SLC22A10Q63ZE4 541 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 RBM45Q8IUH3 476 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms