RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZNF589Q86UQ0 364 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 METTL23Q86XA0 190 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CLVS1Q8IUQ0 354 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 OR8H3Q8N146 312 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TMEM99Q8N816 258 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ZNF680Q8NEM1 530 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TRPV1Q8NER1 839 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 WDR19Q8NEZ3 1342 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TTLQ8NG68 377 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RNF139Q8WU17 664 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PHF10Q8WUB8 498 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 DEPDC1BQ8WUY9 529 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RASSF5Q8WWW0 418 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ABCA10Q8WWZ4 1543 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 NELFBQ8WX92 580 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RAD54LQ92698 747 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 HAUS1Q96CS2 278 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CHMP6Q96FZ7 201 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CEP170P1Q96L14 293 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CCDC43Q96MW1 224 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 BPIFA3Q9BQP9 254 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SIKE1Q9BRV8 207 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CENPKQ9BS16 269 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CCM2Q9BSQ5 444 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 MLPHQ9BV36 600 aaPredicted RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 CARD6Q9BX69 1037 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ANKRD30AQ9BXX3 1397 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 LIN28AQ9H9Z2 209 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 LY9Q9HBG7 655 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 MRM3Q9HC36 420 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 TUFT1Q9NNX1 390 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RAB9BQ9NP90 201 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PFDN4Q9NQP4 134 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 DIABLOQ9NR28 239 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 FAIMQ9NVQ4 179 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 GID8Q9NWU2 228 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 GDAP2Q9NXN4 497 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 COX16Q9P0S2 106 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 DPM3Q9P2X0 92 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PRODH2Q9UF12 536 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 KCNN3Q9UGI6 736 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ATP6V1HQ9UI12 483 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ANGPTL2Q9UKU9 493 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PSME2Q9UL46 239 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PLEKHG1Q9ULL1 1385 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PCDHGA1Q9Y5H4 931 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CACNG2Q9Y698 323 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CUX2O14529 1486 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 WDR7Q9Y4E6 1490 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 KIF27Q86VH2 1401 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RTL1A6NKG5 1358 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CPDO75976 1380 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CCDC7Q96M83 1385 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ACEP12821 1306 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TTC41PQ6P2S7 1318 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 A0A0J9YVX5 310 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 A0A0U1RQK1 487 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ARHGEF37A1IGU5 675 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 A4D1N5 150 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 EFCAB10A6NFE3 127 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 H0YIG0 161 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 EIF3HO15372 352 aaKnown RBP eCLIP1.55□□□□□ -2.16
NUP54-208ENST00000508604 ST8SIA3O43173 380 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 BUB1O43683 1085 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 FCGR3BO75015 233 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ATP9AO75110 1047 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PSIP1O75475 530 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 TOM1L1O75674 476 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 GPX5O75715 221 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 GAS8O95995 478 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 OPN1LWP04000 364 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 IL6P05231 212 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SBK2P0C263 348 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PABPC4LP0CB38 370 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 SP9P0CG40 484 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 LAMP1P11279 417 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ANXA8P13928 327 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 POU2F1P14859 743 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 FUT3P21217 361 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 GDI1P31150 447 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 BMI1P35226 326 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PHBP35232 272 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 NUDT1P36639 197 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 PMELP40967 661 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 HTR2BP41595 481 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 POU3F4P49335 361 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 FHITP49789 147 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 HNMTP50135 292 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 RAP1GDS1P52306 607 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 DIO3P55073 304 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SERTAD2Q14140 314 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 DMC1Q14565 340 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 HADHQ16836 314 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 IQCCQ4KMZ1 466 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 CCDC58Q4VC31 144 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 ANXA8L1Q5VT79 327 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 TXNRD3NBQ6F5E7 133 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 SNRNP48Q6IEG0 339 aaKnown RBP1.55□□□□□ -2.16
NUP54-208ENST00000508604 CENPPQ6IPU0 288 aa1.55□□□□□ -2.16
NUP54-208ENST00000508604 C4orf22Q6V702 233 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms