RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 PPCSQ9HAB8 311 aa10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 HHATLQ9HCP6 504 aa10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 PLSCR4Q9NRQ2 329 aa10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 ACSS1Q9NUB1 689 aaPredicted RBP10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 FBXO34Q9NWN3 711 aa10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 NTMQ9P121 344 aa10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 MCTS1Q9ULC4 181 aaKnown RBP10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 DNAJC15Q9Y5T4 150 aa10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 MAP1AP78559 2803 aaPredicted RBP10.34□□□□□ -0.75
HMGCS1-204ENST00000507293 A0A0J9YW62 118 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 C7orf72A4D263 438 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 TMEM233B4DJY2 109 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 H7C1Q1 480 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 SCDO00767 359 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 TNFSF11O14788 317 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 LSM1O15116 133 aaKnown RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 TRIM13O60858 407 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 SYNGR4O95473 234 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 HEXAP06865 529 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 CHRNGP07510 517 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 ASMTP46597 345 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 PRIM2P49643 509 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 CD226Q15762 336 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 EXOSC6Q5RKV6 272 aaKnown RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 ESPNLQ6ZVH7 1005 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 YTHDF3Q7Z739 585 aaKnown RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 MISPQ8IVT2 679 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 DDIASQ8IXT1 998 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 CIARTQ8N365 385 aaPredicted RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 OR2V1Q8NHB1 315 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 B4GALNT2Q8NHY0 566 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 PPP1R14CQ8TAE6 165 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 POC1BQ8TC44 478 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 ACTRT2Q8TDY3 377 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 TWIST2Q8WVJ9 160 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 CDS1Q92903 461 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 MTERF3Q96E29 417 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 FAM120BQ96EK7 910 aaKnown RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 CHMP6Q96FZ7 201 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 COX4I2Q96KJ9 171 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 TRMOQ9BU70 441 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 UBQLN4Q9NRR5 601 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 SIRT3Q9NTG7 399 aaPredicted RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 ZCCHC3Q9NUD5 404 aaKnown RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 PAQR5Q9NXK6 330 aaPredicted RBP10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 GIMAP2Q9UG22 337 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 TMED5Q9Y3A6 229 aa10.33□□□□□ -0.76
HMGCS1-204ENST00000507293 A0A1W2PQD3 144 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 PIP5K1BO14986 540 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 SCAMP2O15127 329 aaKnown RBP10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 ADAMDEC1O15204 470 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 KLF4O43474 513 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 LY6G6DO95868 133 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 BCKDHAP12694 445 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 PPP3CBP16298 524 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 IL11P20809 199 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 ALDH3A1P30838 453 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 LCN1P31025 176 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 HPCAL1P37235 193 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 SERPINB4P48594 390 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 RAC1P63000 192 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 POU6F2P78424 691 aaPredicted RBP10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 FOXF1Q12946 379 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 LASP1Q14847 261 aaKnown RBP10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 BEX5Q5H9J7 111 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 CPTPQ5TA50 214 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 HBMQ6B0K9 141 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 ZCCHC12Q6PEW1 402 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 PRSS57Q6UWY2 283 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 STAC2Q6ZMT1 411 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 R3HCC1LQ7Z5L2 792 aaKnown RBP10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 EIF1ADQ8N9N8 165 aaKnown RBP10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 OR7A2PQ8NGA2 310 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 AGR3Q8TD06 166 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 ARSGQ96EG1 525 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 APOPT1Q96IL0 206 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 KLHL15Q96M94 604 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 BTBD2Q9BX70 525 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 C12orf49Q9H741 205 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 GLRX2Q9NS18 164 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 GIN1Q9NXP7 522 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 ATP6V1HQ9UI12 483 aa10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 NUP214P35658 2090 aaPredicted RBP10.32□□□□□ -0.76
HMGCS1-204ENST00000507293 NPIPA5A0A0B4J1W7 369 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 TRIM64A6NGJ6 449 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 TRIM64BA6NI03 449 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 FAM171A2A8MVW0 826 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 NPIPA7E9PJI5 369 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 SMAD7O15105 426 aaKnown RBP10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 OIP5O43482 229 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 NPHS1O60500 1241 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 HSPA4LO95757 839 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 HMGN2P05204 90 aaKnown RBP10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 TUBBP07437 444 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 LINGO3P0C6S8 592 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 NPIPA8P0DM63 369 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 DDX5P17844 614 aaKnown RBP10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 ME2P23368 584 aa10.31□□□□□ -0.76
HMGCS1-204ENST00000507293 SHC1P29353 583 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms