RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR5F1O95221 314 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CMPK1P30085 196 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TMEM44Q2T9K0 475 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CEP78Q5JTW2 689 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 LCN1P1Q5VSP4 162 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MFSD12Q6NUT3 480 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TMEM91Q6ZNR0 172 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC44A3Q8N4M1 653 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 OR52N1Q8NH53 320 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ADAMTS15Q8TE58 950 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GANCQ8TET4 914 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DNAJA4Q8WW22 397 aaPredicted RBP14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TTC9Q92623 222 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FCRL4Q96PJ5 515 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FYTTD1Q96QD9 318 aaKnown RBP14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 COQ7Q99807 217 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TTYH2Q9BSA4 534 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 JAM3Q9BX67 310 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 LYARQ9NX58 379 aaKnown RBP14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KLHL28Q9NXS3 571 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MALT1Q9UDY8 824 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KCNN3Q9UGI6 736 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CDH10Q9Y6N8 788 aa14.98□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CENPVL1A0A0U1RR11 272 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HCN1O60741 890 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HLA-DPB1P04440 258 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FAM157BP0CG42 384 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 C5AR1P21730 350 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 IGFALSP35858 605 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CLDN2P57739 230 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 STXBP1P61764 594 aaKnown RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RUNX3Q13761 415 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ENPP2Q13822 863 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FAM214AQ32MH5 1076 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF836Q6ZNA1 936 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GLCCI1Q86VQ1 547 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PAQR7Q86WK9 346 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GALNT12Q8IXK2 581 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SIRT6Q8N6T7 355 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SAMD8Q96LT4 415 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SECISBP2Q96T21 854 aaKnown RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PLSCR3Q9NRY6 295 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ASB6Q9NWX5 421 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZDBF2Q9HCK1 2354 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 C2orf92A0A1B0GVN3 265 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PRR23AA6NEV1 266 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CD8B2A6NJW9 211 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 AKAP8O43823 692 aaKnown RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZGLP1P0C6A0 271 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CD8BP10966 210 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 POLR2CP19387 275 aaPredicted RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PTNP21246 168 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF136P52737 540 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MRPS15P82914 257 aaKnown RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CDC73Q6P1J9 531 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF322Q6U7Q0 402 aaPredicted RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 METAP1DQ6UB28 335 aaPredicted RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CPOQ8IVL8 374 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 Q8N402 240 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ASCC1Q8N9N2 400 aaKnown RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NEIL3Q8TAT5 605 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZFPM2Q8WW38 1151 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ELSPBP1Q96BH3 223 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZC3HAV1LQ96H79 300 aaKnown RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TIMP4Q99727 224 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PRSS27Q9BQR3 290 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ISG20L2Q9H9L3 353 aaKnown RBP14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC7A7Q9UM01 511 aa14.97□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FAM183AA6NL82 134 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ISM1B1AKI9 464 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF888P0CJ79 500 aaPredicted RBP14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC2A2P11168 524 aaPredicted RBP14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NAGAP17050 411 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NDUFV2P19404 249 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HLA-DMAP28067 261 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MLLT3P42568 568 aaPredicted RBP14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MAP2K3P46734 347 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FXYD6P3P58550 94 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RIN1Q13671 783 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 QPRTQ15274 297 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TJAP1Q5JTD0 557 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 B3GLCTQ6Y288 498 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KLBQ86Z14 1044 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TRIM48Q8IWZ4 208 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NLGN4YQ8NFZ3 816 aaPredicted RBP14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 OR2T33Q8NG76 320 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TRIM63Q969Q1 353 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 UBQLN3Q9H347 655 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KIR3DX1Q9H7L2 352 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MTHFD2LQ9H903 347 aaPredicted RBP14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TRPV4Q9HBA0 871 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 WDR70Q9NW82 654 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 POLHQ9Y253 713 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PCDHGB7Q9Y5F8 929 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SIRT4Q9Y6E7 314 aaPredicted RBP14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GON4LQ3T8J9 2241 aa14.96□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GSAPA4D1B5 854 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DUXAA6NLW8 204 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CHST10O43529 356 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KCNJ13O60928 360 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms