RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 MITFO75030 526 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 CPNE3O75131 537 aaKnown RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 CLIC3O95833 236 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 GASTP01350 101 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 HEXBP07686 556 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 DRD5P21918 477 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 SSTR4P31391 388 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 SLC5A2P31639 672 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 ATP12AP54707 1039 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 ISL1P61371 349 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 EEF1A1P68104 462 aaKnown RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 PSG6Q00889 435 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 CD47Q08722 323 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 CDK5R2Q13319 367 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 PIN1Q13526 163 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 RAPSNQ13702 412 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 APOFQ13790 326 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 LAPTM4AQ15012 233 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 ENTPD8Q5MY95 495 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 ZNF773Q6PK81 442 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 CASP12Q6UXS9 341 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 ZNF730Q6ZMV8 503 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 ZNF836Q6ZNA1 936 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 LRRC69Q6ZNQ3 347 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 WDR53Q7Z5U6 358 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 SVOPQ8N4V2 548 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 C16orf52Q8NHV5 167 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 TRUB1Q8WWH5 349 aaKnown RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 ACOT11Q8WXI4 607 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 PIK3R3Q92569 461 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 HSPBAP1Q96EW2 488 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 SLC41A3Q96GZ6 507 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 VSTM2LQ96N03 204 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 TUBA1CQ9BQE3 449 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 TRIM2Q9C040 744 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 HHATLQ9HCP6 504 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 RYDENQ9NUL5 291 aaKnown RBP9.49□□□□□ -0.89
HDAC3-214ENST00000495485 OCIAD1Q9NX40 245 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 RHCGQ9UBD6 479 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 RPS6KB2Q9UBS0 482 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 MKL2Q9ULH7 1088 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 TMEM5Q9Y2B1 443 aa9.49□□□□□ -0.89
HDAC3-214ENST00000495485 FER1L5A0AVI2 2057 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 IGLV3-12A0A075B6K2 115 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 C2orf92A0A1B0GVN3 265 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 SH3D21A4FU49 640 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 HTR3EA5X5Y0 456 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CDHR4A6H8M9 788 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CCDC160A6NGH7 325 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 FRG2CA6NGY1 282 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 TRIM64CA6NLI5 447 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CPSF4LA6NMK7 179 aaKnown RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 H3BN98 237 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 FFAR1O14842 300 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 ABCB7O75027 752 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 ONECUT2O95948 504 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 RECKO95980 971 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 SMIM18P0DKX4 95 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CCL4P13236 92 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CYP4B1P13584 511 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CRHBPP24387 322 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 RFX3P48380 749 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CLK3P49761 638 aaKnown RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 NRG3P56975 720 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 COPZ1P61923 177 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 RHAGQ02094 409 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 TUBA3CQ13748 450 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 ZNF141Q15928 474 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 MEP1AQ16819 746 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 NKAIN1Q4KMZ8 207 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CCNJQ5T5M9 372 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 MRPL2Q5T653 305 aaKnown RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 C1orf189Q5VU69 101 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 RPL13AP3Q6NVV1 102 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 C1orf94Q6P1W5 598 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 PODNL1Q6PEZ8 512 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 ZNF613Q6PF04 617 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 BORAQ6PGQ7 559 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 FIGNL1Q6PIW4 674 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 GPR141Q7Z602 305 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 NLGN4XQ8N0W4 816 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 ZNF615Q8N8J6 731 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 C17orf47Q8NEP4 570 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 NLGN4YQ8NFZ3 816 aaPredicted RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 OR4K5Q8NGD3 323 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 OR9Q2Q8NGE9 314 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 FAM81AQ8TBF8 368 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 PTPMT1Q8WUK0 201 aaPredicted RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 FBLIM1Q8WUP2 373 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 MYDGFQ969H8 173 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 GTPBP3Q969Y2 492 aaKnown RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 LCORQ96JN0 433 aaPredicted RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CCNL2Q96S94 520 aaPredicted RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 BARD1Q99728 777 aaKnown RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 NIPSNAP1Q9BPW8 284 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 QRSL1Q9H0R6 528 aaKnown RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 SOX17Q9H6I2 414 aaPredicted RBP9.48□□□□□ -0.89
HDAC3-214ENST00000495485 UBQLN4Q9NRR5 601 aa9.48□□□□□ -0.89
HDAC3-214ENST00000495485 CLN6Q9NWW5 311 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms