RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MATN1P21941 496 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 KIR2DL3P43628 341 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 AGFG1P52594 562 aaKnown RBP13.62□□□□□ -0.23
USP39-217ENST00000491659 DLX5P56178 289 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 RPS26P62854 115 aaKnown RBP13.62□□□□□ -0.23
USP39-217ENST00000491659 EEF1A1P68104 462 aaKnown RBP13.62□□□□□ -0.23
USP39-217ENST00000491659 FLYWCH1Q4VC44 716 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 AGBL2Q5U5Z8 902 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 EEF1A1P5Q5VTE0 462 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 OR2A2Q6IF42 318 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 PLXDC2Q6UX71 529 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 C6orf120Q7Z4R8 191 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 SPATA19Q7Z5L4 167 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 MTERF4Q7Z6M4 381 aaKnown RBP13.62□□□□□ -0.23
USP39-217ENST00000491659 GCNT2Q8N0V5 402 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 OR5D16Q8NGK9 328 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 B4GALNT2Q8NHY0 566 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 PHOSPHO1Q8TCT1 267 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 ZBTB8AQ96BR9 441 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 INTS12Q96CB8 462 aaKnown RBP13.62□□□□□ -0.23
USP39-217ENST00000491659 AIG1Q9NVV5 245 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 MYO9AB2RTY4 2548 aa13.62□□□□□ -0.23
USP39-217ENST00000491659 NPIPA5A0A0B4J1W7 369 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 GOLGA8QA0A0J9YX86 632 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 PRSS51A0A1B0GVH4 220 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 GOLGA8OA6NCC3 632 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 SHISA8B8ZZ34 492 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 NPIPA7E9PJI5 369 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 GOLGA8NF8WBI6 632 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 CPSF4O95639 269 aaKnown RBP13.61□□□□□ -0.23
USP39-217ENST00000491659 TGM6O95932 706 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 ALDOCP09972 364 aaKnown RBP13.61□□□□□ -0.23
USP39-217ENST00000491659 NPIPA8P0DM63 369 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 S100A3P33764 101 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 CPA2P48052 419 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 FOXF2Q12947 444 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 CD226Q15762 336 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 FAM174BQ3ZCQ3 159 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 SPANXN4Q5MJ08 99 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 ANKRD46Q86W74 232 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 KIF18BQ86Y91 864 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 WDR75Q8IWA0 830 aaKnown RBP13.61□□□□□ -0.23
USP39-217ENST00000491659 ZZZ3Q8IYH5 903 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 ZNF614Q8N883 585 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 ACTRT2Q8TDY3 377 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 ZBTB18Q99592 522 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 PINK1Q9BXM7 581 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 PIGMQ9H3S5 423 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 MED17Q9NVC6 651 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 ZNF175Q9Y473 711 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 KCNE3Q9Y6H6 103 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 DCHS2Q6V1P9 2916 aa13.61□□□□□ -0.23
USP39-217ENST00000491659 CREBBPQ92793 2442 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 C7orf72A4D263 438 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 H0YC42 278 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 TNFRSF21O75509 655 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 NUDT14O95848 222 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 CRHP06850 196 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 UQCRC2P22695 453 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 EPHA3P29320 983 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 SUCLG1P53597 346 aaKnown RBP13.6□□□□□ -0.23
USP39-217ENST00000491659 ATP12AP54707 1039 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 TPD52P55327 224 aaPredicted RBP13.6□□□□□ -0.23
USP39-217ENST00000491659 NME5P56597 212 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 CLDN20P56880 219 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 KRTAP10-9P60411 292 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 OCRLQ01968 901 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 ZNF117Q03924 483 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 SNTB1Q13884 538 aaKnown RBP13.6□□□□□ -0.23
USP39-217ENST00000491659 SGCBQ16585 318 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 TMEM44Q2T9K0 475 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 PLPPR5Q32ZL2 321 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 ATAD3BQ5T9A4 648 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 NXNQ6DKJ4 435 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 C16orf62Q7Z3J2 963 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 LURAP1LQ8IV03 231 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 CLEC4FQ8N1N0 589 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 GTPBP8Q8N3Z3 284 aaPredicted RBP13.6□□□□□ -0.23
USP39-217ENST00000491659 METTL25Q8N6Q8 603 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 SERHL2Q9H4I8 314 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 WDR55Q9H6Y2 383 aaPredicted RBP13.6□□□□□ -0.23
USP39-217ENST00000491659 EXD2Q9NVH0 621 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 JKAMPQ9P055 326 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 PACSIN3Q9UKS6 424 aa13.6□□□□□ -0.23
USP39-217ENST00000491659 A0A1W2PNV4 684 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 GTPBP1O00178 669 aaKnown RBP13.59□□□□□ -0.23
USP39-217ENST00000491659 EIF1AYO14602 144 aaKnown RBP13.59□□□□□ -0.23
USP39-217ENST00000491659 SCN2BO60939 215 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 AGR2O95994 175 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 FCGR2AP12318 317 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 ME2P23368 584 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 CHI3L1P36222 383 aaPredicted RBP13.59□□□□□ -0.23
USP39-217ENST00000491659 KHKP50053 298 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 SUMO3P55854 103 aaPredicted RBP13.59□□□□□ -0.23
USP39-217ENST00000491659 UFM1P61960 85 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 SORDQ00796 357 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 LRRC74AQ0VAA2 488 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 PON3Q15166 354 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 KLHL26Q53HC5 615 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 PPP4R4Q6NUP7 873 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms