RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 IL32P24001 234 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 THBS2P35442 1172 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 CLK3P49761 638 aaKnown RBP13.6□□□□□ -0.23
MCF2L-228ENST00000487354 GNG11P61952 73 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 SLC18A2Q05940 514 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 ACSM2AQ08AH3 577 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 P2RY6Q15077 328 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 CPTPQ5TA50 214 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 ACSM2BQ68CK6 577 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 FAM71E1Q6IPT2 247 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 EXOC3L1Q86VI1 746 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 TDRPQ86YL5 185 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 GATSQ8NAP1 163 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 ACTRT2Q8TDY3 377 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 KLHL15Q96M94 604 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 TMEM237Q96Q45 408 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 ZNF382Q96SR6 550 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 MRPL57Q9BQC6 102 aaKnown RBP13.6□□□□□ -0.23
MCF2L-228ENST00000487354 RHNO1Q9BSD3 238 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 MRPL46Q9H2W6 279 aaKnown RBP13.6□□□□□ -0.23
MCF2L-228ENST00000487354 COQ10BQ9H8M1 238 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 DDX18Q9NVP1 670 aaKnown RBP13.6□□□□□ -0.23
MCF2L-228ENST00000487354 TAS2R7Q9NYW3 318 aa13.6□□□□□ -0.23
MCF2L-228ENST00000487354 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 KRT6AP02538 564 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 KRT6BP04259 564 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 IGHV4-31P0DP07 118 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 GABRA3P34903 492 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 KRT6CP48668 564 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 CASP9P55211 416 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 CDH11P55287 796 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 CAV1Q03135 178 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 ZNF763Q0D2J5 394 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 SLC29A2Q14542 456 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 RASA2Q15283 850 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 CD226Q15762 336 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 NRF1Q16656 503 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 TSNAXIP1Q2TAA8 658 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 BHLHA15Q7RTS1 189 aaPredicted RBP13.59□□□□□ -0.23
MCF2L-228ENST00000487354 TRABD2AQ86V40 505 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 CEP112Q8N8E3 955 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 HTRA1Q92743 480 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 KISS1RQ969F8 398 aaPredicted RBP13.59□□□□□ -0.23
MCF2L-228ENST00000487354 ZNF524Q96C55 264 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 GIMAP5Q96F15 307 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 KCNA7Q96RP8 456 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 CACNG6Q9BXT2 260 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 ZDHHC18Q9NUE0 388 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 NINJ2Q9NZG7 142 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 STOML1Q9UBI4 398 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 SNX8Q9Y5X2 465 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 TENM1Q9UKZ4 2725 aa13.59□□□□□ -0.23
MCF2L-228ENST00000487354 NKX2-2O95096 273 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 ANXA4P09525 319 aaPredicted RBP13.58□□□□□ -0.24
MCF2L-228ENST00000487354 IFI6P09912 130 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 IGFBP5P24593 272 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 SFTPDP35247 375 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 PRIM2P49643 509 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 NUDT6P53370 316 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 PSMD4P55036 377 aaKnown RBP13.58□□□□□ -0.24
MCF2L-228ENST00000487354 MANFP55145 182 aaKnown RBP13.58□□□□□ -0.24
MCF2L-228ENST00000487354 SPOCK1Q08629 439 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 FOXF1Q12946 379 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 ITGADQ13349 1161 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 GLE1Q53GS7 698 aaKnown RBP13.58□□□□□ -0.24
MCF2L-228ENST00000487354 EXOSC6Q5RKV6 272 aaKnown RBP13.58□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF678Q5SXM1 525 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 B3GLCTQ6Y288 498 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 LILRA2Q8N149 483 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF525Q8N782 197 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 FAM110BQ8TC76 370 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 SH3YL1Q96HL8 342 aaPredicted RBP13.58□□□□□ -0.24
MCF2L-228ENST00000487354 KCNK17Q96T54 332 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 BEX2Q9BXY8 128 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 FUT8Q9BYC5 575 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 ALG2Q9H553 416 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 CXorf36Q9H7Y0 433 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 MANSC1Q9H8J5 431 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 NGBQ9NPG2 151 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 PRSS50Q9UI38 385 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 MRTO4Q9UKD2 239 aaKnown RBP13.58□□□□□ -0.24
MCF2L-228ENST00000487354 GRID1Q9ULK0 1009 aa13.58□□□□□ -0.24
MCF2L-228ENST00000487354 ESYT3A0FGR9 886 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 SERTM1A2A2V5 107 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 E7EQL1 145 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 ABCD4O14678 606 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 OIP5O43482 229 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 WIPF1O43516 503 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 NDUFB5O43674 189 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 ULK1O75385 1050 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 LYZL6O75951 148 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 ACP2P11117 423 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 COL6A2P12110 1019 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 COX5AP20674 150 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 GSTM5P46439 218 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 FOXA1P55317 472 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 CARD18P57730 90 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 BTKQ06187 659 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 C2orf80Q0P641 193 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 RNPS1Q15287 305 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms