RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 IFNEQ86WN2 208 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 ZNF740Q8NDX6 193 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 MDS2Q8NDY4 140 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 OR52I1Q8NGK6 324 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 BLOC1S5Q8TDH9 187 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 TRUB1Q8WWH5 349 aaKnown RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 SNX21Q969T3 373 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 SLC25A36Q96CQ1 311 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 ERVK-6Q9BXR3 956 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 PLA2G2FQ9BZM2 168 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 GPN2Q9H9Y4 310 aaPredicted RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 GDAP2Q9NXN4 497 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 UTP6Q9NYH9 597 aaKnown RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 STOX2Q9P2F5 926 aaPredicted RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 MAB21L2Q9Y586 359 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 KIF26AQ9ULI4 1882 aaPredicted RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 LOC100131303A0A0U1RQF7 123 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 TMEM110-MUSTN1A8MSY1 372 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 A8MUA0 341 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 TMX2-CTNND1H3BSU7 103 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 ZBTB14O43829 449 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 AKR7A3O95154 331 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 PCCAP05165 728 aaPredicted RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 MAGP20916 626 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 NTSP30990 170 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 HPDP32754 393 aaPredicted RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 LASP1Q14847 261 aaKnown RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 RNF165Q6ZSG1 346 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 TMEM110Q86TL2 294 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 MTURNQ8N3F0 131 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 FAM71E2Q8N5Q1 922 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 RNF185Q96GF1 192 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 ARHGDIGQ99819 225 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 TBC1D10AQ9BXI6 508 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 TEX13AQ9BXU3 409 aaPredicted RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 KAT8Q9H7Z6 458 aaKnown RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 PRMT8Q9NR22 394 aaPredicted RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 RBM28Q9NW13 759 aaKnown RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 XPO7Q9UIA9 1087 aaKnown RBP1.75□□□□□ -2.13
VPS50-216ENST00000484954 WDR45Q9Y484 360 aa1.75□□□□□ -2.13
VPS50-216ENST00000484954 ASTN1O14525 1302 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 KINO60870 393 aaKnown RBP1.74□□□□□ -2.13
VPS50-216ENST00000484954 ZNF823P16415 610 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 PRDX6P30041 224 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 EMDP50402 254 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 CCR6P51684 374 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 MYBPC1Q00872 1141 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 MOBPQ13875 183 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 MORF4L2Q15014 288 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 FAM159AQ6UWV7 190 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 C1orf186Q6ZWK4 172 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 HSD11B1LQ7Z5J1 315 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 KRT77Q7Z794 578 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 ZNF429Q86V71 674 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 C10orf53Q8N6V4 93 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 OR9A1PQ8NGU1 263 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 SLC17A9Q9BYT1 436 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 DDX47Q9H0S4 455 aaKnown RBP1.74□□□□□ -2.13
VPS50-216ENST00000484954 ZDHHC11Q9H8X9 412 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 COG4Q9H9E3 785 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 SH2D2AQ9NP31 389 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 HOMER3Q9NSC5 361 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 CYP39A1Q9NYL5 469 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 TP53TG5Q9Y2B4 290 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 GMPPBQ9Y5P6 360 aa1.74□□□□□ -2.13
VPS50-216ENST00000484954 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.73□□□□□ -2.13
VPS50-216ENST00000484954 HCN1O60741 890 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 HSF2BPO75031 334 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 ICOSLGO75144 302 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 TRIM3O75382 744 aaPredicted RBP1.73□□□□□ -2.13
VPS50-216ENST00000484954 CD5P06127 495 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 PTPN6P29350 595 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 AKT2P31751 481 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 PRDX2P32119 198 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 KRT83P78385 493 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 MAP2K1Q02750 393 aaPredicted RBP1.73□□□□□ -2.13
VPS50-216ENST00000484954 FUT7Q11130 342 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 C16orf72Q14CZ0 275 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 SYPL1Q16563 259 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 CFAP221Q4G0U5 840 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 ATF7IP2Q5U623 682 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 UNQ9370/PRO34162Q6UXP9 181 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 DNM1P46Q6ZS02 220 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 LEMD2Q8NC56 503 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 OR52E1Q8NGJ3 308 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 OR1E3Q8WZA6 343 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 NAP1L3Q99457 506 aaPredicted RBP1.73□□□□□ -2.13
VPS50-216ENST00000484954 FTHL17Q9BXU8 183 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 RSPO3Q9BXY4 272 aaPredicted RBP1.73□□□□□ -2.13
VPS50-216ENST00000484954 NACA2Q9H009 215 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 COMMD8Q9NX08 183 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 GALPQ9UBC7 116 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 BCAP29Q9UHQ4 241 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 ZNF490Q9ULM2 529 aaPredicted RBP1.73□□□□□ -2.13
VPS50-216ENST00000484954 TDRKHQ9Y2W6 561 aaKnown RBP1.73□□□□□ -2.13
VPS50-216ENST00000484954 SLCO1B1Q9Y6L6 691 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 LRP4O75096 1905 aa1.73□□□□□ -2.13
VPS50-216ENST00000484954 SLIT3O75094 1523 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 IGLV4-69A0A075B6H9 119 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 GJE1A6NN92 205 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms