RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 IGHV3-35A0A0C4DH35 117 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 SAGE2PA6NJ88 616 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 GPAA1O43292 621 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 TRIM3O75382 744 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 IDH1O75874 414 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 B3GAT3O94766 335 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 MFN2O95140 757 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 DUSP14O95147 198 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 OPN1LWP04000 364 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 HOXC4P09017 264 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 H2AFZP0C0S5 128 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 EPB41P11171 864 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 BCKDHAP12694 445 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 DRD5P21918 477 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 IL2RGP31785 369 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 MAGEA5P43359 124 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 XCR1P46094 333 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC25A1P53007 311 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 RIPK4P57078 832 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 RPL8P62917 257 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 NTHL1P78549 312 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 DPYSL3Q14195 570 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 KCNJ11Q14654 390 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 TGIF1Q15583 401 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 CELF3Q5SZQ8 465 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 DCST2Q5T1A1 773 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC25A24Q6NUK1 477 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 SCYL2Q6P3W7 929 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 PAMR1Q6UXH9 720 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 ARMCX2Q7L311 632 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 LRRC70Q7Z2Q7 622 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 ANKRD37Q7Z713 158 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 IFNEQ86WN2 208 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 C9orf40Q8IXQ3 194 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 CSNK1A1LQ8N752 337 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 ZSCAN4Q8NAM6 433 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 OR2T34Q8NGX1 318 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 CNIH3Q8TBE1 160 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 NANPQ8TBE9 248 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 M1APQ8TC57 530 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 RAB7BQ96AH8 199 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 AKR1E2Q96JD6 320 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 SIGLEC12Q96PQ1 595 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 OR5M11Q96RB7 305 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 TPPP3Q9BW30 176 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 ELOVL4Q9GZR5 314 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 RIBC2Q9H4K1 309 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 EHFQ9NZC4 300 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 IL17CQ9P0M4 197 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 SMC3Q9UQE7 1217 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 ARID1AO14497 2285 aa2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 SF3B1O75533 1304 aaKnown RBP eCLIP2.13□□□□□ -2.07
CCDC88A-212ENST00000474059 ATP10DQ9P241 1426 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 PPIAL4CA0A0B4J2A2 164 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 IGKV6-21A0A0C4DH24 114 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 KLF18A0A0U1RQI7 1052 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 ANGPT2O15123 496 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 CTAGE5O15320 804 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 STX7O15400 261 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 LATO43561 262 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 OR1F1O43749 312 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 NUDT21O43809 227 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 NEBLO76041 1014 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 UFL1O94874 794 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 IGF1P05019 195 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 KRT8P05787 483 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 HBQ1P09105 142 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 PPIAL4GP0DN37 164 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 PTMSP20962 102 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 IGHV1-2P23083 117 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 PRKAR2BP31323 418 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 SOX6P35712 828 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 MDH2P40926 338 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 BDKRB1P46663 353 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 ACADVLP49748 655 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 LIM2P55344 173 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 CNTN2Q02246 1040 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 RGS1Q08116 209 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 SNTB2Q13425 540 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 ASAH1Q13510 395 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 SERTAD2Q14140 314 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 ATXN7L3Q14CW9 347 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 MAPK6Q16659 721 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 GSG1Q2KHT4 349 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 CCDC57Q2TAC2 916 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 NADK2Q4G0N4 442 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 TEX44Q53QW1 395 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 PAN3Q58A45 887 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC22A10Q63ZE4 541 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 OR8G2PQ6IF36 304 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 GALNT17Q6IS24 598 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 UFSP1Q6NVU6 142 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 ZNF530Q6P9A1 599 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 IGFL2Q6UWQ7 119 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 CES3Q6UWW8 571 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 C2orf66Q6UXQ4 117 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 DPY19L4Q7Z388 723 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 MCOLN2Q8IZK6 566 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 OR2T33Q8NG76 320 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 OR2L5Q8NG80 312 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms