RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 AP4B1Q9Y6B7 739 aa14.15□□□□□ -0.14
CCDC88B-205ENST00000472524 NPIPA5A0A0B4J1W7 369 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 SH3D21A4FU49 640 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 NPIPA7E9PJI5 369 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 EIF1AYO14602 144 aaKnown RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF500O60304 480 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 TNFRSF21O75509 655 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 CRHP06850 196 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 NPIPA8P0DM63 369 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF17P17021 662 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 PRPS1L1P21108 318 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ATP6V1C1P21283 382 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF41P51814 821 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ABCE1P61221 599 aaKnown RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ADAM8P78325 824 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 MAD2L1Q13257 205 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 POU4F3Q15319 338 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 CD226Q15762 336 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 SGCBQ16585 318 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 TMEM44Q2T9K0 475 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 PGS1Q32NB8 556 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 CEP85LQ5SZL2 805 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 PAMR1Q6UXH9 720 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 BTLAQ7Z6A9 289 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 METTL25Q8N6Q8 603 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 OR56A1Q8NGH5 318 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 OR5AK3PQ8NH89 298 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ADAMTS15Q8TE58 950 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 COQ8BQ96D53 544 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 STARD4Q96DR4 205 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ALPK1Q96QP1 1244 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 NPAS1Q99742 590 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 KLHDC3Q9BQ90 382 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 DUSP26Q9BV47 211 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ACTRT3Q9BYD9 372 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 BHLHE41Q9C0J9 482 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 OPN3Q9H1Y3 402 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 PIGUQ9H490 435 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 NEUROD4Q9HD90 331 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 DUSP22Q9NRW4 184 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 FAF1Q9UNN5 650 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF175Q9Y473 711 aa14.14□□□□□ -0.15
CCDC88B-205ENST00000472524 A0A087WZY1 265 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 MSTNO14793 375 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 TM9SF1O15321 606 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 OPN1LWP04000 364 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 LCN1P31025 176 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 EIF1AXP47813 144 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 EMX2Q04743 252 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 PLPPR5Q32ZL2 321 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 DCST2Q5T1A1 773 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 GGNQ86UU5 652 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 MISPQ8IVT2 679 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 RIMKLAQ8IXN7 391 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 NATD1Q8N6N6 113 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 PSMA8Q8TAA3 256 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 PHOSPHO1Q8TCT1 267 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 SFXN5Q8TD22 340 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 MBD6Q96DN6 1003 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 PGM2Q96G03 612 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 RNF145Q96MT1 663 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 DACH2Q96NX9 599 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 PRRG4Q9BZD6 226 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 TMEM185BQ9H7F4 350 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 RNF122Q9H9V4 155 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 HHATLQ9HCP6 504 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 KCNK9Q9NPC2 374 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 MED17Q9NVC6 651 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 NOP53Q9NZM5 478 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 STOML1Q9UBI4 398 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 KCNE3Q9Y6H6 103 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 FREM1Q5H8C1 2179 aa14.13□□□□□ -0.15
CCDC88B-205ENST00000472524 PRR14LQ5THK1 2151 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 UQCRHLA0A096LP55 91 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 A0A1W2PQD3 144 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 BIRC5O15392 142 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 ATE1O95260 518 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 KRT16P08779 473 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 BGNP21810 368 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 KIR2DL2P43627 348 aaPredicted RBP14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 SLC1A6P48664 564 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 CLDN8P56748 225 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 HBA1P69905 142 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 FAM27E3Q08E93 113 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 OR4F3Q6IEY1 312 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 WDR75Q8IWA0 830 aaKnown RBP14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 CLECL1Q8IZS7 167 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 GTPBP8Q8N3Z3 284 aaPredicted RBP14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 ZNF614Q8N883 585 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 OR5D16Q8NGK9 328 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 B4GALNT2Q8NHY0 566 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 ZBTB8AQ96BR9 441 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 MOAP1Q96BY2 351 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 ZIM3Q96PE6 472 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 OR7D2Q96RA2 312 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 C20orf27Q9GZN8 174 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 AKTIPQ9H8T0 292 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 SSU72Q9NP77 194 aaKnown RBP14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 GPATCH2Q9NW75 528 aa14.12□□□□□ -0.15
CCDC88B-205ENST00000472524 NDRG3Q9UGV2 375 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms