RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 GMDSO60547 372 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 NEURL1O76050 574 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 VAPBO95292 243 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 SYNGR4O95473 234 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 GP1BAP07359 652 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 UGT1A4P22310 534 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 GSTM2P28161 218 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 LAP3P28838 519 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 TYK2P29597 1187 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 GABRA5P31644 462 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 CDH5P33151 784 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 UGT1A3P35503 534 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 UGT1A5P35504 534 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 AHRP35869 848 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 TMPOP42166 694 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MAGEA11P43364 429 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PDLIM4P50479 330 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 UCNP55089 124 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MLF1P58340 268 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PPP2R2BQ00005 443 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 CHI3L2Q15782 390 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 CTU2Q2VPK5 515 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 TEX30Q5JUR7 227 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 FNBP1LQ5T0N5 605 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 BEND3Q5T5X7 828 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 CD300LGQ6UXG3 332 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 CDHR3Q6ZTQ4 885 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PGAP1Q75T13 922 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 GPR141Q7Z602 305 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 SERPINA9Q86WD7 417 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 GPALPP1Q8IXQ4 340 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 BOD1L2Q8IYS8 172 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 LINC00518Q8N0U6 118 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PARP8Q8N3A8 854 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 ALLCQ8N6M5 410 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PAPD5Q8NDF8 572 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 OR5M8Q8NGP6 311 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MCOLN3Q8TDD5 553 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 GPR137Q96N19 417 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MBOAT7Q96N66 472 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 DDOQ99489 341 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PRRT1Q99946 306 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 DCLRE1BQ9H816 532 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 SFXN1Q9H9B4 322 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 DNAJC4Q9NNZ3 241 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 CMTM6Q9NX76 183 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 STMN3Q9NZ72 180 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 NYAP2Q9P242 653 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 NLKQ9UBE8 527 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 P2RX2Q9UBL9 471 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 ERVW-1Q9UQF0 538 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 PRG3Q9Y2Y8 225 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MRPS18BQ9Y676 258 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MAP3K5Q99683 1374 aa4.36□□□□□ -1.71
CCDC88A-210ENST00000468534 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ANKUB1A6NFN9 424 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SYCE1LA8MT33 242 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 H3BN98 237 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CCSO14618 274 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SIVA1O15304 175 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 STX7O15400 261 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SSX4O60224 188 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ADAP1O75689 374 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SCGNO76038 276 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SCELO95171 688 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 DEXIO95424 95 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CLDN7O95471 211 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SERPINA5P05154 406 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 PRSS2P07478 247 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SFTPBP07988 381 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 RD3LP0DJH9 198 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CETPP11597 493 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ETS2P15036 469 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ARSBP15848 533 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 MPZP25189 248 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CD82P27701 267 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HLA-DMAP28067 261 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HMOX2P30519 316 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SSTR1P30872 391 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 UGT2B10P36537 528 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CFHR2P36980 270 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 AVPR1AP37288 418 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 AQP2P41181 271 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 LHX1P48742 406 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 RPL14P50914 215 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 PSMD4P55036 377 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC3A1Q07837 685 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 RBBP4Q09028 425 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 MGAT3Q09327 533 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 Q0VFX4 171 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CRMP1Q14194 572 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 NR1D2Q14995 579 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 TRAM2Q15035 370 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CHRFAM7AQ494W8 412 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 PTPN20Q4JDL3 420 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 LACTB2Q53H82 288 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 PIGGQ5H8A4 983 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 BRMS1LQ5PSV4 323 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HES5Q5TA89 166 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 OTUD1Q5VV17 481 aaPredicted RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms