RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 NATD1Q8N6N6 113 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 ZNF781Q8N8C0 355 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 OR56A1Q8NGH5 318 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 SFXN5Q8TD22 340 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 ACTRT2Q8TDY3 377 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 SMPDL3BQ92485 455 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 CDS1Q92903 461 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 ADGRG7Q96K78 797 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 DACH2Q96NX9 599 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 ZIM3Q96PE6 472 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 FOXC2Q99958 501 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 ACTRT3Q9BYD9 372 aa11.22□□□□□ -0.61
CPSF4-208ENST00000452047 BHLHE41Q9C0J9 482 aaPredicted RBP11.22□□□□□ -0.61
CPSF4-208ENST00000452047 CCM2LQ9NUG4 571 aaPredicted RBP11.22□□□□□ -0.61
CPSF4-208ENST00000452047 C2CD3Q4AC94 2353 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 FLNAP21333 2647 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 WDR91A4D1P6 747 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 SH3D21A4FU49 640 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 SCDO00767 359 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 TM9SF1O15321 606 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 BIRC5O15392 142 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 AQP8O94778 261 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 CGAP01215 116 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 HRGP04196 525 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 CCKARP32238 428 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 CPOXP36551 454 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 CLDN8P56748 225 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 ABCE1P61221 599 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 RPS3AP61247 264 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 HBA1P69905 142 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 EMX2Q04743 252 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 MAD2L1Q13257 205 aaPredicted RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 MPP2Q14168 576 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 PDCD2Q16342 344 aaPredicted RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 SMU1Q2TAY7 513 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 CTU2Q2VPK5 515 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 LSM12Q3MHD2 195 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 ZNF474Q6S9Z5 364 aaPredicted RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 PAMR1Q6UXH9 720 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 CNEP1R1Q8N9A8 125 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 PPP1R14CQ8TAE6 165 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 ZBTB8AQ96BR9 441 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 SH3YL1Q96HL8 342 aaPredicted RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 SORT1Q99523 831 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 PRPF18Q99633 342 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 DUSP26Q9BV47 211 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 PLEKHF2Q9H8W4 249 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 MED17Q9NVC6 651 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 NOP53Q9NZM5 478 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 EIF3LQ9Y262 564 aaKnown RBP11.21□□□□□ -0.61
CPSF4-208ENST00000452047 PLEKHA6Q9Y2H5 1048 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 TESMINQ9Y4I5 508 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 KCNE3Q9Y6H6 103 aa11.21□□□□□ -0.61
CPSF4-208ENST00000452047 A0A1W2PPR1 153 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 NPIPB9F8W1W9 429 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 ADAMDEC1O15204 470 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 SMNDC1O75940 238 aaKnown RBP eCLIP11.2□□□□□ -0.621e-8■■■■■ 30.2
CPSF4-208ENST00000452047 KRT16P08779 473 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 LINGO3P0C6S8 592 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 CD8BP10966 210 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 FCGR2AP12318 317 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 HPGDP15428 266 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 SLC6A8P48029 635 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 SIRPAP78324 504 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 ZNF117Q03924 483 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 FAM27E3Q08E93 113 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 KLHL26Q53HC5 615 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 DCST2Q5T1A1 773 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.2□□□□□ -0.62
CPSF4-208ENST00000452047 OR10D3Q8NH80 312 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 OR5AK3PQ8NH89 298 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 POC1BQ8TC44 478 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 MOAP1Q96BY2 351 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 CHMP6Q96FZ7 201 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 PGM2Q96G03 612 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 RNF145Q96MT1 663 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 OPN3Q9H1Y3 402 aaPredicted RBP11.2□□□□□ -0.62
CPSF4-208ENST00000452047 SERHL2Q9H4I8 314 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 AKTIPQ9H8T0 292 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 HAO1Q9UJM8 370 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 FAF1Q9UNN5 650 aaPredicted RBP11.2□□□□□ -0.62
CPSF4-208ENST00000452047 RAP2CQ9Y3L5 183 aa11.2□□□□□ -0.62
CPSF4-208ENST00000452047 NPIPA5A0A0B4J1W7 369 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 NPIPA7E9PJI5 369 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 EIF1AYO14602 144 aaKnown RBP11.19□□□□□ -0.62
CPSF4-208ENST00000452047 OIP5O43482 229 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 SOX30O94993 753 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 SNUPNO95149 360 aaKnown RBP11.19□□□□□ -0.62
CPSF4-208ENST00000452047 MYZAPP0CAP1 466 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 NPIPA8P0DM63 369 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 ATP6V1C1P21283 382 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 CD79BP40259 229 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 EIF1AXP47813 144 aaKnown RBP11.19□□□□□ -0.62
CPSF4-208ENST00000452047 SLC1A6P48664 564 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 ZNF41P51814 821 aaPredicted RBP11.19□□□□□ -0.62
CPSF4-208ENST00000452047 RAC1P63000 192 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 FGFBP1Q14512 234 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 SGCBQ16585 318 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 SPDYE7PQ495Y7 208 aa11.19□□□□□ -0.62
CPSF4-208ENST00000452047 CEP85LQ5SZL2 805 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms