RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ZNF793Q6ZN11 406 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 OOSP2Q86WS3 158 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 GID4Q8IVV7 300 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 C1orf216Q8TAB5 229 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 HYLS1Q96M11 299 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ARHGAP9Q9BRR9 750 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 FUZQ9BT04 418 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 CDH10Q9Y6N8 788 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 BPTFQ12830 3046 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 RNF13O43567 381 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 IFNA16P05015 189 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ANXA3P12429 323 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 DNASE1P24855 282 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 GBX2P52951 348 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 GPR176Q14439 515 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ACSM3Q53FZ2 586 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 EIPR1Q53HC9 387 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 GPR135Q8IZ08 494 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 OR2L5Q8NG80 312 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 OR52E2Q8NGJ4 325 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 OR8K3Q8NH51 312 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 UBQLN3Q9H347 655 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 LSM2Q9Y333 95 aaKnown RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 CACNG2Q9Y698 323 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 CASP8AP2Q9UKL3 1982 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 SPTBP11277 2137 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 FLRT2O43155 660 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 CDC123O75794 336 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 RAB3BP20337 219 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 AK4P27144 223 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 TRHRP34981 398 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 PSMB10P40306 273 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 LIMS1P48059 325 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 HCCSP53701 268 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 FAM111BQ6SJ93 734 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ZNF322Q6U7Q0 402 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 COMTD1Q86VU5 262 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 MRPL43Q8N983 215 aaKnown RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 OR13C5Q8NGS8 318 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 OR4Q3Q8NH05 313 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 FOLH1BQ9HBA9 442 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 SPHK1Q9NYA1 384 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 PHF11Q9UIL8 331 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 PCDHGB7Q9Y5F8 929 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 A0A1W2PQU0 124 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 TSPAN4O14817 238 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 HLA-DQA2P01906 255 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 SYPP08247 313 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 EVI2BP34910 448 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 GZMKP49863 264 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ARHGAP19Q14CB8 494 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ZNHIT3Q15649 155 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 ZNF77Q15935 545 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 HES5Q5TA89 166 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 SLC25A25Q6KCM7 469 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 GPR155Q7Z3F1 870 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 PLCZ1Q86YW0 608 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ELP4Q96EB1 424 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 CCDC120Q96HB5 630 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 HS6ST2Q96MM7 605 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 MTHFD2LQ9H903 347 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 WSB2Q9NYS7 404 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 CHST2Q9Y4C5 530 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 INSL6Q9Y581 213 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 CACNA1IQ9P0X4 2223 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 PRAMEF27A3QJZ7 478 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 CARNS1A5YM72 827 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 URADA6NGE7 173 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 CHURC1-FNTBB4DL54 471 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 SMAD9O15198 467 aaKnown RBP11.08□□□□□ -0.64
MSH6-204ENST00000445503 HK1P19367 917 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 PXNP49023 591 aaPredicted RBP11.08□□□□□ -0.64
MSH6-204ENST00000445503 CCR6P51684 374 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 OR12D2P58182 307 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 CRYZQ08257 329 aaKnown RBP11.08□□□□□ -0.64
MSH6-204ENST00000445503 EXOSC7Q15024 291 aaKnown RBP11.08□□□□□ -0.64
MSH6-204ENST00000445503 NDUFAF6Q330K2 333 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 PRSS45Q7RTY3 260 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 PFN4Q8NHR9 129 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 TMEM239Q8WW34 195 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 ATF6BQ99941 703 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 TMEM43Q9BTV4 400 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 OR10A4Q9H209 315 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 CDCP1Q9H5V8 836 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 C6orf106Q9H6K1 298 aaPredicted RBP11.08□□□□□ -0.64
MSH6-204ENST00000445503 CXCL10P02778 98 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 TEAD1P28347 426 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 PGDP52209 483 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 TMEM201Q5SNT2 666 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 ABHD17CQ6PCB6 329 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 LYPD4Q6UWN0 246 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 RTL4Q6ZR62 310 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 RDH10Q8IZV5 341 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 GATSQ8NAP1 163 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 WDFY2Q96P53 400 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 DCLRE1CQ96SD1 692 aaKnown RBP11.08□□□□□ -0.64
MSH6-204ENST00000445503 C1QTNF7Q9BXJ2 289 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 SLITRK2Q9H156 845 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 SLC25A18Q9H1K4 315 aa11.08□□□□□ -0.64
MSH6-204ENST00000445503 TRAPPC13A5PLN9 417 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms