RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ABHD11Q8NFV4 315 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 MAL2Q969L2 176 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 POLR2J2Q9GZM3 115 aaKnown RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 FPR1P21462 350 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 SLITRK4Q8IW52 837 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 STT3BQ8TCJ2 826 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 SLC46A1Q96NT5 459 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 OR2A14Q96R47 310 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 SLC6A15Q9H2J7 730 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 GSKIPQ9P0R6 139 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 RPH3AQ9Y2J0 694 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 LCTP09848 1927 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 A0A1W2PPK0 400 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 STK17BO94768 372 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 CSTBP04080 98 aaKnown RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 ATF4P18848 351 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 CLPPQ16740 277 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 EIF2S3LQ2VIR3 472 aaKnown RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 CMPK2Q5EBM0 449 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 TMEM178AQ8NBL3 297 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 FANK1Q8TC84 345 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 RBP7Q96R05 134 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 ZNF350Q9GZX5 532 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 IDSB3KWA1 339 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 GAPDHSO14556 408 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 GFRA3O60609 400 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 FURINP09958 794 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 ECH1Q13011 328 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 AGERQ15109 404 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 ZNF423Q2M1K9 1284 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 PAGE3Q5JUK9 113 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 CA13Q8N1Q1 262 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 TMBIM1Q969X1 311 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 FOLH1BQ9HBA9 442 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 TSPAN12O95859 305 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 MECP2P51608 486 aaKnown RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 GBX2P52951 348 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 GXYLT1Q4G148 440 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 WDR53Q7Z5U6 358 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-207ENST00000429896 PAQR7Q86WK9 346 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 UPB1Q9UBR1 384 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 PCDHGB7Q9Y5F8 929 aa12.07□□□□□ -0.48
PTCH1-207ENST00000429896 ARNTLO00327 626 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 GRPRP30550 384 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 CD83Q01151 205 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 ENPP6Q6UWR7 440 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 NT5CQ8TCD5 201 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 POLDIP3Q9BY77 421 aaKnown RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 ZNF160Q9HCG1 818 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 ASB6Q9NWX5 421 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 KCNS2Q9ULS6 477 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 TET1Q8NFU7 2136 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 WASHC1A8K0Z3 465 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 TEX46H3BTG2 121 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 TOX3O15405 576 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 FESP07332 822 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 ARPC4P59998 168 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 ELAVL1Q15717 326 aaKnown RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 DEFB109BQ30KR1 87 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 BORCS8Q96FH0 119 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 UBQLN4Q9NRR5 601 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 MGAT4BQ9UQ53 548 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 PCDHGB5Q9Y5G0 923 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 IGHV3-20A0A0C4DH32 117 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 HK1P19367 917 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 POU3F2P20265 443 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 NUBP1P53384 320 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 RBM39Q14498 530 aaKnown RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 CNPY1Q3B7I2 92 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 GTF2IRD2BQ6EKJ0 949 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 FAM111BQ6SJ93 734 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 GTF2IRD2Q86UP8 949 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 LCORQ96JN0 433 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 CDCP1Q9H5V8 836 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 NPIPA5A0A0B4J1W7 369 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 PRR33A8MZF0 331 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 NPIPA7E9PJI5 369 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 NPIPA8P0DM63 369 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 GGT1P19440 569 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 SMSP52788 366 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 FAM53BQ14153 422 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 FRMPD2BQ6IN97 320 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 BORCS5Q969J3 196 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 POLHQ9Y253 713 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 ZNF646O15015 1829 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 A0A1W2PRQ8 180 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 UNC119BA6NIH7 251 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 FAAHO00519 579 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 TIGD6Q17RP2 521 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 SGTBQ96EQ0 304 aa12.06□□□□□ -0.48
PTCH1-207ENST00000429896 MBD1Q9UIS9 605 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-207ENST00000429896 SPAARA0A1B0GVQ0 90 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 D6RAR5 112 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 ANKRD28O15084 1053 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 SSX5O60225 188 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 TACR1P25103 407 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 FASLGP48023 281 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 LTB4RQ15722 352 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 VWA2Q5GFL6 755 aa12.05□□□□□ -0.48
PTCH1-207ENST00000429896 MARCH9Q86YJ5 346 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms