RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TEX264Q9Y6I9 313 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 RGPD2P0DJD1 1756 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ADH4P08319 380 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ACPPP15309 386 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 RAB3BP20337 219 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PTNP21246 168 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 IL4RP24394 825 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ITGB7P26010 798 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 AFF3P51826 1226 aaKnown RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CATR1Q13166 79 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF542PQ5EBM4 170 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 RABL3Q5HYI8 236 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 KRBOX4Q5JUW0 171 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR52W1Q6IF63 320 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TIFABQ6ZNK6 161 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PHC2Q8IXK0 858 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 VWA5B2Q8N398 1253 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 FITM2Q8N6M3 262 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 FIBINQ8TAL6 211 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF417Q8TAU3 575 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ASB17Q8WXJ9 295 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ARL11Q969Q4 196 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 RBMXL1Q96E39 390 aaKnown RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 IER2Q9BTL4 223 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 HES7Q9BYE0 225 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ATG4BQ9Y4P1 393 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 KNTC1P50748 2209 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 SALL3Q9BXA9 1300 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM265A0A087WTH1 108 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CNIH1O95406 144 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 VNN1O95497 513 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CHATP28329 748 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CD38P28907 300 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PYCR1P32322 319 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ETV6P41212 452 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PTH2RP49190 550 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 SSR4P51571 173 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 IL10RAQ13651 578 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 B3GLCTQ6Y288 498 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR4D6Q8NGJ1 314 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR8J1Q8NGP2 316 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 IL1F10Q8WWZ1 152 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 NXPE3Q969Y0 559 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 SORCS2Q96PQ0 1159 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF337Q9Y3M9 751 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 NDUFB2O95178 105 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GRPRP30550 384 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PRSS3P35030 304 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CDKN2CP42773 168 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 MICAQ29983 383 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 C6orf132Q5T0Z8 1188 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF321PQ8N8H1 164 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR4A16Q8NH70 328 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 NPLOC4Q8TAT6 608 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CMTM2Q8TAZ6 248 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 FNDC9Q8TBE3 224 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CMSS1Q9BQ75 279 aaKnown RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 NICN1Q9BSH3 213 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 EEF1E1-BLOC1S5C9J1V9 151 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PCDH17O14917 1159 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM63AO94886 807 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ARSBP15848 533 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 VIPR2P41587 438 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 HES1Q14469 280 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZMAT1Q5H9K5 638 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 KLBQ86Z14 1044 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 SLC35F2Q8IXU6 374 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GTPBP8Q8N3Z3 284 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 MINDY1Q8N5J2 469 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR7G1Q8NGA0 311 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR52N2Q8NGI0 321 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR14A16Q8NHC5 309 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ITPKCQ96DU7 683 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 UHRF2Q96PU4 802 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PINK1Q9BXM7 581 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GLTPQ9NZD2 209 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 MRC1P22897 1456 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 IGLV3-22A0A075B6J6 115 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 FZD9O00144 591 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ADAM23O75077 832 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 DIRAS1O95057 198 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 KNG1P01042 644 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 DBHP09172 617 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 CSF1P09603 554 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 CKMT1AP12532 417 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 KLHDC10Q6PID8 442 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ST7LQ8TDW4 575 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SCRN2Q96FV2 425 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 APOBEC3GQ9HC16 384 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 COQ4Q9Y3A0 265 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SCN3AQ9NY46 2000 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 A0A1W2PPK0 400 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 C20orf202A1L168 122 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF587BE7ETH6 402 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 INMT-MINDY4F8WBC2 141 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PPP1R11O60927 126 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 EEDO75530 441 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 KCNK2O95069 426 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TP53P04637 393 aaPredicted RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms