RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MED17Q9NVC6 651 aa17.18■□□□□ 0.34
SF3A1-202ENST00000411423 KCNE5Q9UJ90 142 aa17.18■□□□□ 0.34
SF3A1-202ENST00000411423 FAF1Q9UNN5 650 aaPredicted RBP17.18■□□□□ 0.34
SF3A1-202ENST00000411423 MED12LQ86YW9 2145 aa17.18■□□□□ 0.34
SF3A1-202ENST00000411423 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 RNF103-CHMP3A0A140T963 221 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 ZNF195O14628 629 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 HDAC3O15379 428 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 TNFSF13O75888 250 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 CPSF4O95639 269 aaKnown RBP17.17■□□□□ 0.34
SF3A1-202ENST00000411423 IL11P20809 199 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 MATN1P21941 496 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 LCN1P31025 176 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 ZNF117Q03924 483 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 PLPPR5Q32ZL2 321 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 GLYR1Q49A26 553 aaPredicted RBP17.17■□□□□ 0.34
SF3A1-202ENST00000411423 SLC9B1Q4ZJI4 515 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 KLHL26Q53HC5 615 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 CBLN3Q6UW01 205 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 GRAMD2AQ8IUY3 354 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 SMPDL3BQ92485 455 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 RNASE6Q93091 150 aaKnown RBP17.17■□□□□ 0.34
SF3A1-202ENST00000411423 MOAP1Q96BY2 351 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 SDF2Q99470 211 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 PIGQQ9BRB3 760 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 MANSC1Q9H8J5 431 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 CRIM1Q9NZV1 1036 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 KCNN3Q9UGI6 736 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 GPR45Q9Y5Y3 372 aa17.17■□□□□ 0.34
SF3A1-202ENST00000411423 EEF1E1-BLOC1S5C9J1V9 151 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 SCDO00767 359 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 EEF1E1O43324 174 aaKnown RBP17.16■□□□□ 0.34
SF3A1-202ENST00000411423 IL18BPO95998 194 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 OPN1LWP04000 364 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 OPRM1P35372 400 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 FUT5Q11128 374 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 MYBPHQ13203 477 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 FAM174BQ3ZCQ3 159 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 TTMPQ5BVD1 217 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 ZZZ3Q8IYH5 903 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 KIRREL3Q8IZU9 778 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 CHDHQ8NE62 594 aaPredicted RBP17.16■□□□□ 0.34
SF3A1-202ENST00000411423 ARSGQ96EG1 525 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 DTNBP1Q96EV8 351 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 MAELQ96JY0 434 aaKnown RBP17.16■□□□□ 0.34
SF3A1-202ENST00000411423 SLC35G5Q96KT7 338 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 MARK4Q96L34 752 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 TM9SF2Q99805 663 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 ZNF559Q9BR84 538 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 OR51I1Q9H343 314 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 NKIRAS1Q9NYS0 192 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 POLQO75417 2590 aa17.16■□□□□ 0.34
SF3A1-202ENST00000411423 PRSS51A0A1B0GVH4 220 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 A0A1W2PNV4 684 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 PRAMEF27A3QJZ7 478 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 E9PBE3 544 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 FCMRO60667 390 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 TNFRSF21O75509 655 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 LINGO3P0C6S8 592 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 CDKN2CP42773 168 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 TOMM34Q15785 309 aaPredicted RBP17.15■□□□□ 0.34
SF3A1-202ENST00000411423 CTU2Q2VPK5 515 aaKnown RBP17.15■□□□□ 0.34
SF3A1-202ENST00000411423 FLYWCH1Q4VC44 716 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 AGBL2Q5U5Z8 902 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 SAXO2Q658L1 398 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 VWA1Q6PCB0 445 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 LUZP2Q86TE4 346 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 LSRQ86X29 649 aaPredicted RBP17.15■□□□□ 0.34
SF3A1-202ENST00000411423 GTPBP8Q8N3Z3 284 aaPredicted RBP17.15■□□□□ 0.34
SF3A1-202ENST00000411423 MEIOBQ8N635 442 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 METTL25Q8N6Q8 603 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 B4GALNT2Q8NHY0 566 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 RAB3IL1Q8TBN0 382 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 PHOSPHO1Q8TCT1 267 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 ZNF75CPQ92670 426 aaPredicted RBP17.15■□□□□ 0.34
SF3A1-202ENST00000411423 NRGNQ92686 78 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 ADGRG7Q96K78 797 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 RNF145Q96MT1 663 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 OR52B2Q96RD2 323 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 INPP5KQ9BT40 448 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 SFXN3Q9BWM7 321 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 PINK1Q9BXM7 581 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 CARD8Q9Y2G2 431 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 AP4B1Q9Y6B7 739 aa17.15■□□□□ 0.34
SF3A1-202ENST00000411423 SLC22A20A6NK97 555 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 EFNA2O43921 213 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 KRT16P08779 473 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 HPGDP15428 266 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 ZNF17P17021 662 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 ATP6V1C1P21283 382 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 SHC1P29353 583 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 SLC6A8P48029 635 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 ATP12AP54707 1039 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 FOXF1Q12946 379 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 ATG16L1Q676U5 607 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 SPATA19Q7Z5L4 167 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 GOT1L1Q8NHS2 421 aaPredicted RBP17.14■□□□□ 0.33
SF3A1-202ENST00000411423 FNDC9Q8TBE3 224 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 MIPOL1Q8TD10 442 aa17.14■□□□□ 0.33
SF3A1-202ENST00000411423 ACTRT2Q8TDY3 377 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms