RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CATR1Q13166 79 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TMEM244Q5VVB8 128 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 C22orf42Q6IC83 251 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CHCHD4Q8N4Q1 142 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 C12orf45Q8N5I9 185 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 PQLC3Q8N755 202 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 MRPL43Q8N983 215 aaKnown RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 BBS1Q8NFJ9 593 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 STT3BQ8TCJ2 826 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 MRGPRX2Q96LB1 330 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SIGLEC10Q96LC7 697 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SLC2A13Q96QE2 648 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CACNG6Q9BXT2 260 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TSPAN10Q9H1Z9 355 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 STEAP1Q9UHE8 339 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 GVINP1Q7Z2Y8 2422 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 C17orf113A0A1B0GUU1 675 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 FAM72CH0Y354 149 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 B4GAT1O43505 415 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SC5DO75845 299 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 OR7C1O76099 320 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 SCAF4O95104 1147 aaKnown RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 CD1DP15813 335 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CYCSP99999 105 aaKnown RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 POU3F1Q03052 451 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 GPR50Q13585 617 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 OR8B8Q15620 311 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 FAM72AQ5TYM5 149 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PRAMEF20Q5VT98 475 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 FAM72DQ6L9T8 149 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 EPGNQ6UW88 154 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 FAM72BQ86X60 149 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SLC39A11Q8N1S5 342 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 Q8N402 240 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 OR1J4Q8NGS1 313 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 GOT1L1Q8NHS2 421 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 TLCD1Q96CP7 247 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 OR14A2Q96R54 314 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ZNF587Q96SQ5 575 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 PREBQ9HCU5 417 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 HRASLSQ9HDD0 168 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TUBG2Q9NRH3 451 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 NXT1Q9UKK6 140 aaKnown RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 GJD2Q9UKL4 321 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 NME7Q9Y5B8 376 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 RP1P56715 2156 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 OR5K3A6NET4 321 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SOBPA7XYQ1 873 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 H2AFB2P0C5Z0 115 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 F3P13726 295 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 BDKRB2P30411 391 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 GSK3AP49840 483 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SSR4P51571 173 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CLDN8P56748 225 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TAS2R30P59541 319 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PITX1P78337 314 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 DEFB103AP81534 67 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SSX2Q16385 188 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PIGWQ7Z7B1 504 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ADIPOR2Q86V24 386 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SLC43A2Q8N370 569 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 DEFB123Q8N688 67 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PKP2Q99959 881 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SYNPO2LQ9H987 977 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 FKRPQ9H9S5 495 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 MRPL15Q9P015 296 aaKnown RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 KIF25Q9UIL4 384 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 IER3IP1Q9Y5U9 82 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PSAT1Q9Y617 370 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 MADDQ8WXG6 1647 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 RIMS1Q86UR5 1692 aaKnown RBP6.77□□□□□ -1.32
UPF2-203ENST00000397053 NKX6-3A6NJ46 265 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 EIF3FO00303 357 aaPredicted RBP6.77□□□□□ -1.32
UPF2-203ENST00000397053 GPR137BO60478 399 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 SLC16A7O60669 478 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 TSPAN15O95858 294 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 ABHD16AO95870 558 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 F10P00742 488 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 F11P03951 625 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 TK1P04183 234 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 CT45A6P0DMU7 189 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 CT45A5P0DMU8 189 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 CT45A7P0DMV0 189 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 CT45A8P0DMV1 189 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 CT45A9P0DMV2 189 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 SLC2A1P11166 492 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 BMP1P13497 986 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 SLC5A2P31639 672 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 GJA5P36382 358 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 RAB15P59190 212 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 RPS18P62269 152 aaKnown RBP6.77□□□□□ -1.32
UPF2-203ENST00000397053 ZNF169Q14929 603 aaPredicted RBP6.77□□□□□ -1.32
UPF2-203ENST00000397053 MICAQ29983 383 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 ZNF791Q3KP31 576 aaPredicted RBP6.77□□□□□ -1.32
UPF2-203ENST00000397053 CT45A2Q5DJT8 189 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 CT45A1Q5HYN5 189 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 EXOSC6Q5RKV6 272 aaKnown RBP6.77□□□□□ -1.32
UPF2-203ENST00000397053 FAM83HQ6ZRV2 1179 aaPredicted RBP6.77□□□□□ -1.32
UPF2-203ENST00000397053 SLC22A16Q86VW1 577 aa6.77□□□□□ -1.32
UPF2-203ENST00000397053 OR5D14Q8NGL3 314 aa6.77□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms