RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 C12orf57Q99622 126 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 PLEKHJ1Q9NW61 149 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 TAS2R16Q9NYV7 291 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ADAM12O43184 909 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 C8AP07357 584 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 HNF1BP35680 557 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ARSDP51689 593 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 RPL23AP62750 156 aaKnown RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF551Q7Z340 670 aaPredicted RBP11.2□□□□□ -0.62
SYNPO-202ENST00000394243 GLB1L2Q8IW92 636 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 CMTM1Q8IZ96 169 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 OR4M1Q8NGD0 313 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 WFIKKN2Q8TEU8 576 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 MINDY3Q9H8M7 445 aa11.2□□□□□ -0.62
SYNPO-202ENST00000394243 C1orf226A1L170 272 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ARHGAP33O14559 1287 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 TNFP01375 233 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SELPP16109 830 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 TAS2R38P59533 333 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 PLA2G7Q13093 441 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 RAB31Q13636 194 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 EBPQ15125 230 aaKnown RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SLC9A3R2Q15599 337 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 PDZD11Q5EBL8 140 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 GDF6Q6KF10 455 aaPredicted RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 CHTF18Q8WVB6 975 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ADAMTS14Q8WXS8 1223 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 C10orf90Q96M02 699 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SORBS1Q9BX66 1292 aaKnown RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 B4GALT6Q9UBX8 382 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 C6P13671 934 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 NAT1P18440 290 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 S100A11P31949 105 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SQSTM1Q13501 440 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 NPAS4Q8IUM7 802 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SULF2Q8IWU5 870 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 OR10Z1Q8NGY1 313 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SLC2A12Q8TD20 617 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 NPRL2Q8WTW4 380 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 RSC1A1Q92681 617 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ZDHHC12Q96GR4 267 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 BORCS6Q96GS4 357 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 INTS14Q96SY0 518 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SAP130Q9H0E3 1048 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 RNF39Q9H2S5 420 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 EMC7Q9NPA0 242 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 PRTFDC1Q9NRG1 225 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 FAM212BQ9NTI7 297 aaPredicted RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 MYO18AQ92614 2054 aaKnown RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 CBY3A6NI87 242 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 P2RX6O15547 441 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ITGB2P05107 769 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ALPLP05186 524 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 DDOSTP39656 456 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 CLDN6P56747 220 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 Q6ZVL8 140 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 BPIFB2Q8N4F0 458 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 OR51Q1Q8NH59 317 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 METTL2AQ96IZ6 378 aaKnown RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF587Q96SQ5 575 aaPredicted RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ERVMER34-1Q9H9K5 563 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 OLAHQ9NV23 265 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 PRODH2Q9UF12 536 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 KIF25Q9UIL4 384 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 PCDHA9Q9Y5H5 950 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 C2orf78A6NCI8 922 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SMPD1P17405 629 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 INCA1Q0VD86 236 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 GAB1Q13480 694 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 GAREM2Q75VX8 874 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 FCRLAQ7L513 359 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 MITD1Q8WV92 249 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 MARC2Q969Z3 335 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 HERPUD2Q9BSE4 406 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 C17orf113A0A1B0GUU1 675 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 WDR5P61964 334 aaKnown RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 TLE1Q04724 770 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 CMTM8Q8IZV2 173 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 WDTC1Q8N5D0 677 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 FAM213BQ8TBF2 198 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 LRRC15Q8TF66 581 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 RNF141Q8WVD5 230 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SLC25A31Q9H0C2 315 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 SLC43A1O75387 559 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 EOMESO95936 686 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 FGF4P08620 206 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 TYRP1P17643 537 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ELOAQ14241 798 aaKnown RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 RBMS2Q15434 407 aaKnown RBP11.19□□□□□ -0.62
SYNPO-202ENST00000394243 CPZQ66K79 652 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 ADAM5Q6NVV9 412 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 C22orf39Q6P5X5 142 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 TEPSINQ96N21 525 aa11.19□□□□□ -0.62
SYNPO-202ENST00000394243 IMPA2O14732 288 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 DPM1O60762 260 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 POLR2CP19387 275 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 CASRP41180 1078 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 LTBQ06643 244 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 PDZK1IP1Q13113 114 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 KIAA0141Q14154 515 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms