RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CHI3L1P36222 383 aaPredicted RBP10.41□□□□□ -0.74
CUX1-204ENST00000393824 RFX3P48380 749 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 CDK6Q00534 326 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 CSTF1Q05048 431 aaKnown RBP10.41□□□□□ -0.74
CUX1-204ENST00000393824 RAB40BQ12829 278 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 SEC23BQ15437 767 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 TBC1D3GQ6DHY5 549 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 TBC1D3CQ6IPX1 549 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 LRFN4Q6PJG9 635 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 UNC5DQ6UXZ4 953 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 ASB18Q6ZVZ8 466 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 CHMP1BQ7LBR1 199 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 RRM2BQ7LG56 351 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 TBC1D3Q8IZP1 549 aaPredicted RBP10.41□□□□□ -0.74
CUX1-204ENST00000393824 TRAM1L1Q8N609 369 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 ZNF485Q8NCK3 441 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 NEIL3Q8TAT5 605 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 GATAD2BQ8WXI9 593 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 ADAMTS14Q8WXS8 1223 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 RAB7BQ96AH8 199 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 ZNF436Q9C0F3 470 aaPredicted RBP10.41□□□□□ -0.74
CUX1-204ENST00000393824 RNF32Q9H0A6 362 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 HCN3Q9P1Z3 774 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 COPZ2Q9P299 210 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 LIPT1Q9Y234 373 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 MRPS7Q9Y2R9 242 aaKnown RBP10.41□□□□□ -0.74
CUX1-204ENST00000393824 PRELID3BQ9Y3B1 194 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 PRKAB1Q9Y478 270 aa10.41□□□□□ -0.74
CUX1-204ENST00000393824 CHURC1-FNTBB4DL54 471 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 UGT2B7P16662 529 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 C4BPBP20851 252 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 RPL3P39023 403 aaKnown RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 PNLIPRP1P54315 467 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 CLDN2P57739 230 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 PFN3P60673 137 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 DMWDQ09019 674 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 C2orf80Q0P641 193 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 MAP4K2Q12851 820 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 PUM1Q14671 1186 aaKnown RBP eCLIP10.4□□□□□ -0.745e-7■■■□□ 14.6
CUX1-204ENST00000393824 XKR6Q5GH73 641 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 GRHL2Q6ISB3 625 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 TRIM40Q6P9F5 258 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 FGD2Q7Z6J4 655 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 LRRC28Q86X40 367 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 RASGEF1AQ8N9B8 481 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 KCT2Q8NC54 265 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 OR5M3Q8NGP4 307 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 APOBEC4Q8WW27 367 aaKnown RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 HSD17B8Q92506 261 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 GLYATL1Q969I3 302 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 ZNF582Q96NG8 517 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 POLR2J3Q9H1A7 115 aaKnown RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 C6orf106Q9H6K1 298 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 IMP3Q9NV31 184 aaKnown RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 TVP23BQ9NYZ1 205 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 POMT2Q9UKY4 750 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 CBLCQ9ULV8 474 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 BAIAP2Q9UQB8 552 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 POM121BA6NF01 834 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 MGAT4DA6NG13 374 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 CACNB4O00305 520 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 SCAMP1O15126 338 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 TSPAN6O43657 245 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 SNAPC5O75971 98 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 ANXA4P09525 319 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 ACP2P11117 423 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 LIM2P55344 173 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 RAE1P78406 368 aaKnown RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 FLI1Q01543 452 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 ZNF169Q14929 603 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 IRF4Q15306 451 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 GSG1Q2KHT4 349 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 TSSK4Q6SA08 328 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 DBX2Q6ZNG2 339 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 VRK3Q8IV63 474 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 ZNF547Q8IVP9 402 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 CDH26Q8IXH8 852 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 PIAS4Q8N2W9 510 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 RNF175Q8N4F7 328 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 DEFB119Q8N690 84 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 WDR48Q8TAF3 677 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 FOXJ1Q92949 421 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 FOPNLQ96NB1 174 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 C1QTNF6Q9BXI9 259 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 C1QTNF2Q9BXJ5 285 aa10.4□□□□□ -0.74
CUX1-204ENST00000393824 USP36Q9P275 1121 aaKnown RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 NFKBIL1Q9UBC1 381 aaPredicted RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 EXOSC1Q9Y3B2 195 aaKnown RBP10.4□□□□□ -0.74
CUX1-204ENST00000393824 LOC105369274A0A096LPK9 316 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 FAAHO00519 579 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ABCD4O14678 606 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 NCR1O76036 304 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 GALP22466 123 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ELAVL4P26378 380 aaKnown RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 GPR1P46091 355 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 HBA1P69905 142 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 DPTQ07507 201 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 CRYZQ08257 329 aaKnown RBP10.39□□□□□ -0.75
CUX1-204ENST00000393824 OPCMLQ14982 345 aa10.39□□□□□ -0.75
CUX1-204ENST00000393824 ST3GAL2Q16842 350 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms