RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 ZNF781Q8N8C0 355 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 COX18Q8N8Q8 333 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 FNDC5Q8NAU1 212 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 POC1BQ8TC44 478 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 CDS1Q92903 461 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 ZBTB8AQ96BR9 441 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 MBD6Q96DN6 1003 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 PKNOX2Q96KN3 472 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 SORT1Q99523 831 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 BHLHE41Q9C0J9 482 aaPredicted RBP12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 ATAD3AQ9NVI7 634 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 ABCA4P78363 2273 aa12.29□□□□□ -0.44
TNFRSF1A-202ENST00000366159 PRRC2AP48634 2157 aaKnown RBP12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 SH3D21A4FU49 640 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 ADAMDEC1O15204 470 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 SEC14L5O43304 696 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 AQP8O94778 261 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 SOX30O94993 753 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 C6orf47O95873 294 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 SERPINE1P05121 402 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 LINGO3P0C6S8 592 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 CD8BP10966 210 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 ABCE1P61221 599 aaKnown RBP12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 RAC1P63000 192 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 HBA1P69905 142 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 PON3Q15166 354 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 LSM12Q3MHD2 195 aaKnown RBP12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 KRT71Q3SY84 523 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.28□□□□□ -0.444e-6■■■□□ 16.5
TNFRSF1A-202ENST00000366159 SZRD1Q7Z422 152 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 P4HA3Q7Z4N8 544 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 GATSQ8NAP1 163 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 OR56A1Q8NGH5 318 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 SFXN5Q8TD22 340 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 TUBGCP3Q96CW5 907 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 PGM2Q96G03 612 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 PRPF18Q99633 342 aaKnown RBP12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 TMUB1Q9BVT8 246 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 ACTRT3Q9BYD9 372 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 MED17Q9NVC6 651 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 VDAC3Q9Y277 283 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 TESMINQ9Y4I5 508 aa12.28□□□□□ -0.44
TNFRSF1A-202ENST00000366159 NUP214P35658 2090 aaPredicted RBP12.27□□□□□ -0.44
TNFRSF1A-202ENST00000366159 HAX1O00165 279 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 TM9SF1O15321 606 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 RGS16O15492 202 aaPredicted RBP12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 EFNA2O43921 213 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 GMFGO60234 142 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 SCN2BO60939 215 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 IL11P20809 199 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 SLC6A8P48029 635 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 CPA2P48052 419 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 MAD2L1Q13257 205 aaPredicted RBP12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 CHI3L2Q15782 390 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 DCST2Q5T1A1 773 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 AP1ARQ63HQ0 302 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 PAMR1Q6UXH9 720 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 MTERF4Q7Z6M4 381 aaKnown RBP12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 B4GALNT2Q8NHY0 566 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 SMPDL3BQ92485 455 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 MOAP1Q96BY2 351 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ZNF524Q96C55 264 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 DUSP26Q9BV47 211 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 OPN3Q9H1Y3 402 aaPredicted RBP12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 SERHL2Q9H4I8 314 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 AKTIPQ9H8T0 292 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 NEUROD4Q9HD90 331 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 PLSCR4Q9NRQ2 329 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ELOVL5Q9NYP7 299 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 NOP53Q9NZM5 478 aaKnown RBP12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ICAM5Q9UMF0 924 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 EIF3LQ9Y262 564 aaKnown RBP12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 PLEKHA6Q9Y2H5 1048 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 RAP2CQ9Y3L5 183 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 SNX8Q9Y5X2 465 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ACTL7BQ9Y614 415 aa12.27□□□□□ -0.45
TNFRSF1A-202ENST00000366159 WDR91A4D1P6 747 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 SCDO00767 359 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ANKRD28O15084 1053 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 OIP5O43482 229 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 SNUPNO95149 360 aaKnown RBP12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ATE1O95260 518 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 CCKARP32238 428 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 CD79BP40259 229 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 RPS3AP61247 264 aaKnown RBP12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 PHC1P78364 1004 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ZNF117Q03924 483 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 TP53BP2Q13625 1128 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 FGFBP1Q14512 234 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 CBLN3Q6UW01 205 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 C22orf34Q6ZV56 151 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 FAM214BQ7L5A3 538 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 WDR75Q8IWA0 830 aaKnown RBP12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 LRRC34Q8IZ02 419 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 CNEP1R1Q8N9A8 125 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ZNF610Q8N9Z0 462 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 OR8J2Q8NGG1 315 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 OR10D3Q8NH80 312 aa12.26□□□□□ -0.45
TNFRSF1A-202ENST00000366159 ADAMTS15Q8TE58 950 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms