RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 DCST2Q5T1A1 773 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 C6orf120Q7Z4R8 191 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 ZZZ3Q8IYH5 903 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 LRRC34Q8IZ02 419 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 MEIOBQ8N635 442 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 TESCQ96BS2 214 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 TEX37Q96LM6 180 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 ZFP3Q96NJ6 502 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 WDR55Q9H6Y2 383 aaPredicted RBP16.57■□□□□ 0.24
CLN3-202ENST00000355477 CRIM1Q9NZV1 1036 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 MARCOQ9UEW3 520 aaPredicted RBP16.57■□□□□ 0.24
CLN3-202ENST00000355477 PRSS51A0A1B0GVH4 220 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 OIP5O43482 229 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 CPSF4O95639 269 aaKnown RBP16.56■□□□□ 0.24
CLN3-202ENST00000355477 KRT16P08779 473 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 KITP10721 976 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 CAPN3P20807 821 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 ATP6V1C1P21283 382 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 MATN1P21941 496 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 EPHA3P29320 983 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 CASP9P55211 416 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 UFM1P61960 85 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 CASP8Q14790 479 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 KLHL26Q53HC5 615 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 SPANXN4Q5MJ08 99 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-202ENST00000355477 OGFOD2Q6N063 350 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 CHMP1BQ7LBR1 199 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 WDR75Q8IWA0 830 aaKnown RBP16.56■□□□□ 0.24
CLN3-202ENST00000355477 OR4A15Q8NGL6 344 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 ACTRT2Q8TDY3 377 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 SMPDL3BQ92485 455 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 FIG4Q92562 907 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 ARL8AQ96BM9 186 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 ZNF845Q96IR2 970 aaPredicted RBP16.56■□□□□ 0.24
CLN3-202ENST00000355477 SDF2Q99470 211 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 SFXN3Q9BWM7 321 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 MANSC1Q9H8J5 431 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 SLC24A3Q9HC58 644 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 NKIRAS1Q9NYS0 192 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 AP4B1Q9Y6B7 739 aa16.56■□□□□ 0.24
CLN3-202ENST00000355477 HIVEP1P15822 2718 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 A0A087WZY1 265 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 GOLGA8QA0A0J9YX86 632 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 GOLGA8OA6NCC3 632 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 SLC22A20A6NK97 555 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 NPIPB9F8W1W9 429 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 GOLGA8NF8WBI6 632 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 HDAC3O15379 428 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 TNFRSF21O75509 655 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 TNFSF13O75888 250 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 SOX30O94993 753 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 C1QCP02747 245 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 PSMA4P25789 261 aaKnown RBP16.55■□□□□ 0.24
CLN3-202ENST00000355477 EEFSECP57772 596 aaKnown RBP16.55■□□□□ 0.24
CLN3-202ENST00000355477 OCRLQ01968 901 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 PLPPR5Q32ZL2 321 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 BHLHB9Q6PI77 547 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 GGNQ86UU5 652 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 MISPQ8IVT2 679 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 GTPBP8Q8N3Z3 284 aaPredicted RBP16.55■□□□□ 0.24
CLN3-202ENST00000355477 B4GALNT2Q8NHY0 566 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 POC1BQ8TC44 478 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 PHOSPHO1Q8TCT1 267 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 LRRC46Q96FV0 321 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 PINK1Q9BXM7 581 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 MED17Q9NVC6 651 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 AIG1Q9NVV5 245 aa16.55■□□□□ 0.24
CLN3-202ENST00000355477 FOXD3Q9UJU5 478 aaPredicted RBP16.55■□□□□ 0.24
CLN3-202ENST00000355477 RNF103-CHMP3A0A140T963 221 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 A0A1W2PNV4 684 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 C9JVG2 144 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 OPN1LWP04000 364 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 IL12AP29459 219 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 ATP12AP54707 1039 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 ZNF117Q03924 483 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 FAM174BQ3ZCQ3 159 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 FLYWCH1Q4VC44 716 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 ANXA8L1Q5VT79 327 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 ATG16L1Q676U5 607 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 CBLN3Q6UW01 205 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 OLIG3Q7RTU3 272 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 P4HA3Q7Z4N8 544 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 SPATA19Q7Z5L4 167 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 LUZP2Q86TE4 346 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 RAB3IL1Q8TBN0 382 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 SLC35G5Q96KT7 338 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 RNF145Q96MT1 663 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 HOXD1Q9GZZ0 328 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 HHATLQ9HCP6 504 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 PCDHGB4Q9UN71 923 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 GPR45Q9Y5Y3 372 aa16.54■□□□□ 0.24
CLN3-202ENST00000355477 C7orf72A4D263 438 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 E9PBE3 544 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 FCMRO60667 390 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 CTAG2O75638 210 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 LINGO3P0C6S8 592 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 ZNF17P17021 662 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 IL11P20809 199 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms