RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 DSN1Q9H410 356 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 ZNF703Q9H7S9 590 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 ABCD2Q9UBJ2 740 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 PACSIN3Q9UKS6 424 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 COL6A6A6NMZ7 2263 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 BCAS1O75363 584 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 GCM2O75603 506 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 ELAVL4P26378 380 aaKnown RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 PRAMEF8Q5VWM4 474 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 PRAMEF7Q5VXH5 474 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 SLC22A16Q86VW1 577 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 VRK2Q86Y07 508 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 PGAM4Q8N0Y7 254 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 HIPK4Q8NE63 616 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 PMM1Q92871 262 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 SH3YL1Q96HL8 342 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 KLHDC3Q9BQ90 382 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 SPATA9Q9BWV2 254 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 RSPO3Q9BXY4 272 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 DEFB127Q9H1M4 99 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 UBQLN3Q9H347 655 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 SPAG4Q9NPE6 437 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 OLAHQ9NV23 265 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 TMEM181Q9P2C4 612 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 SUCOQ9UBS9 1254 aaKnown RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 C15orf41Q9Y2V0 281 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 NPIPA5E9PKD4 350 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 TFECO14948 347 aaPredicted RBP20.18■□□□□ 0.82
SHMT1-203ENST00000354098 PLAURQ03405 335 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 FGFBP1Q14512 234 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 CBLN3Q6UW01 205 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 C6orf89Q6UWU4 347 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 PRICKLE2Q7Z3G6 844 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 PEX5LQ8IYB4 626 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 DEFB107AQ8IZN7 70 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 FADS6Q8N9I5 356 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 OR2T12Q8NG77 320 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 OR2M3Q8NG83 312 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 OR52P1PQ8NH57 321 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 NR4A3Q92570 626 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 ADA2Q9NZK5 511 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 NPIPA1Q9UND3 350 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 ANGPT4Q9Y264 503 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 CARD8Q9Y2G2 431 aa20.18■□□□□ 0.82
SHMT1-203ENST00000354098 FAM220BPB1ANY3 271 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 H3BNH8 94 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 ACOT7O00154 380 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 CBR3O75828 277 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 DBIP07108 87 aaKnown RBP20.17■□□□□ 0.82
SHMT1-203ENST00000354098 IL7RP16871 459 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 GDF1P27539 372 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 PCGF2P35227 344 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 KCNJ10P78508 379 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 ZNF117Q03924 483 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 CMPK2Q5EBM0 449 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 RNF148Q8N7C7 305 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 WDR60Q8WVS4 1066 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 ARSGQ96EG1 525 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 ZDHHC11Q9H8X9 412 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 AGPAT4Q9NRZ5 378 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 AP3M1Q9Y2T2 418 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 NCKAP5O14513 1909 aa20.17■□□□□ 0.82
SHMT1-203ENST00000354098 IGLV3-32A0A0A0MS00 114 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 GTPBP1O00178 669 aaKnown RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 HCRTR2O43614 444 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 PDE9AO76083 593 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 CSTAP01040 98 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 ETS2P15036 469 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 ADH7P40394 386 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 GSK3BP49841 420 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 PCBP3P57721 371 aaKnown RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 C16orf89Q6UX73 402 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 MISPQ8IVT2 679 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 FAM109AQ8N4B1 249 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 OR4K17Q8NGC6 315 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 CDRT15Q96T59 188 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 ALG2Q9H553 416 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 RLIMQ9NVW2 624 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 B4GALT7Q9UBV7 327 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 GPC6Q9Y625 555 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 TRAPPC6AO75865 159 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 PABPC4LP0CB38 370 aaKnown RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 UBTFL6P0CB48 400 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 UBL4AP11441 157 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 PGM1P36871 562 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 TDGF1P3P51864 188 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 EEFSECP57772 596 aaKnown RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 TOMM20Q15388 145 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 ZNF836Q6ZNA1 936 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 EIF3MQ7L2H7 374 aaKnown RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 MICU2Q8IYU8 434 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 OIT3Q8WWZ8 545 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 SLX1AQ9BQ83 275 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 NDE1Q9NXR1 346 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 TAS2R1Q9NYW7 299 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 ZNF443Q9Y2A4 671 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-203ENST00000354098 CHST2Q9Y4C5 530 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 LIPGQ9Y5X9 500 aa20.16■□□□□ 0.82
SHMT1-203ENST00000354098 ELOVL7A1L3X0 281 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms