RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZNF226Q9NYT6 803 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 CNIH4Q9P003 139 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 PCDHGB2Q9Y5G2 931 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 SNX5Q9Y5X3 404 aa12.36□□□□□ -0.43
HMGB1-202ENST00000339872 IGHV3-20A0A0C4DH32 117 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 FAM86C2PA6NEL3 165 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 PIP5K1CO60331 668 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 FMO6PO60774 539 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 TP53P04637 393 aaPredicted RBP12.35□□□□□ -0.43
HMGB1-202ENST00000339872 GP1BAP07359 652 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 GSTM3P21266 225 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 ZFP36L1Q07352 338 aaKnown RBP12.35□□□□□ -0.43
HMGB1-202ENST00000339872 PMS2P3Q13401 168 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 IL11RAQ14626 422 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 EBPQ15125 230 aaKnown RBP12.35□□□□□ -0.43
HMGB1-202ENST00000339872 CD300LDQ6UXZ3 194 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 DBX2Q6ZNG2 339 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 GRAMD2AQ8IUY3 354 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 NRMQ8IXM6 262 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 SPARTQ8N0X7 666 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 TOR1AIP2Q8NFQ8 470 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 OR1N1Q8NGS0 311 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 RHOXF1Q8NHV9 184 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 GNPDA2Q8TDQ7 276 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 ADIPOR1Q96A54 375 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF559Q9BR84 538 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 NRSN2Q9GZP1 204 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 EVA1AQ9H8M9 152 aa12.35□□□□□ -0.43
HMGB1-202ENST00000339872 CDC14CA4D256 554 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 SYNDIG1LA6NDD5 238 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 CPNE3O75131 537 aaKnown RBP12.34□□□□□ -0.43
HMGB1-202ENST00000339872 OMPP47874 163 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 SLC35A2P78381 396 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 CNPY1Q3B7I2 92 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 HLA-DQA1Q5Y7H0 255 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 MBOAT2Q6ZWT7 520 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 SLC29A4Q7RTT9 530 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 OVCH1Q7RTY7 1134 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 BPHLQ86WA6 291 aaPredicted RBP12.34□□□□□ -0.43
HMGB1-202ENST00000339872 PRR22Q8IZ63 422 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 BMPERQ8N8U9 685 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 GRHL3Q8TE85 626 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 PRSS27Q9BQR3 290 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 H3BSA7 217 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 ADAM11O75078 769 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 IL33O95760 270 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 CSTAP01040 98 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 CCL4P13236 92 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 GABRB1P18505 474 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 GPR4P46093 362 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 TSPAN31Q12999 210 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 RAB39AQ14964 217 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 NDUFAF6Q330K2 333 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 SLX4IPQ5VYV7 408 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 LCN10Q6JVE6 187 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 WDR88Q6ZMY6 472 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 PTCHD4Q6ZW05 846 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 ANKRD37Q7Z713 158 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 IQCF1Q8N6M8 205 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 DGCR14Q96DF8 476 aaKnown RBP12.34□□□□□ -0.43
HMGB1-202ENST00000339872 MESP1Q9BRJ9 268 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 WWTR1Q9GZV5 400 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 DSN1Q9H410 356 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 DUSP21Q9H596 190 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 EGLN3Q9H6Z9 239 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 TMEM27Q9HBJ8 222 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 RXFP3Q9NSD7 469 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 FLRT3Q9NZU0 649 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 ERVK-18Q9QC07 812 aa12.34□□□□□ -0.43
HMGB1-202ENST00000339872 COL27A1Q8IZC6 1860 aaPredicted RBP12.34□□□□□ -0.43
HMGB1-202ENST00000339872 SERINC4A6NH21 518 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 VGLL3A8MV65 326 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 MEN1O00255 615 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ALOX12BO75342 701 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 NR0B1P51843 470 aaKnown RBP12.33□□□□□ -0.44
HMGB1-202ENST00000339872 NUDT6P53370 316 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 DCAF7P61962 342 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 SF3A2Q15428 464 aaKnown RBP12.33□□□□□ -0.44
HMGB1-202ENST00000339872 XAF1Q6GPH4 301 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 BORAQ6PGQ7 559 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 CASP12Q6UXS9 341 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 AHSA2Q719I0 299 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 KIF18BQ86Y91 864 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 CMIPQ8IY22 773 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 METTL21AQ8WXB1 218 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 PHOX2BQ99453 314 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 CXorf56Q9H5V9 222 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 KRCC1Q9NPI7 259 aaPredicted RBP12.33□□□□□ -0.44
HMGB1-202ENST00000339872 MRTO4Q9UKD2 239 aaKnown RBP12.33□□□□□ -0.44
HMGB1-202ENST00000339872 CEPT1Q9Y6K0 416 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 CNOT3O75175 753 aaKnown RBP12.33□□□□□ -0.44
HMGB1-202ENST00000339872 HPGDP15428 266 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF28P17035 718 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ACAA2P42765 397 aaKnown RBP12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ZSWIM7Q19AV6 140 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ZBED5Q49AG3 693 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 CCDC157Q569K6 752 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 C12orf73Q69YU5 71 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF613Q6PF04 617 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF550Q7Z398 422 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms