RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RAB3AP20336 220 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 GRPRP30550 384 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ID2Q02363 134 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 SLAMF1Q13291 335 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 SLC14A2Q15849 920 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 LRIT3Q3SXY7 679 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ASPGQ86U10 573 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 TRMT2BQ96GJ1 504 aaKnown RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 JSRP1Q96MG2 331 aaPredicted RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 DPH7Q9BTV6 452 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 TUBG2Q9NRH3 451 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 A0A0U1RQS6 177 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 C1orf226A1L170 272 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 CHATP28329 748 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 IDUAP35475 653 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 RIDAP52758 137 aaKnown RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF91Q05481 1191 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 HYAL2Q12891 473 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF169Q14929 603 aaPredicted RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 NKPD1Q17RQ9 610 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.84□□□□□ -0.67
VPS39-201ENST00000318006 TCTE1Q5JU00 501 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 CST9Q5W186 159 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 METTL2BQ6P1Q9 378 aaKnown RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 OR6V1Q8N148 313 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 C16orf58Q96GQ5 468 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 PSD2Q9BQI7 771 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ATG4BQ9Y4P1 393 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 A6NIN4 97 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF705GA8MUZ8 300 aaPredicted RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 SLC16A6O15403 523 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 LALBAP00709 142 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 SDC1P18827 310 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 C5AR1P21730 350 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 PRDX3P30048 256 aaKnown RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 TRIM23P36406 574 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ADARB1P78563 741 aaKnown RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 MFSD13AQ14CX5 517 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 HTR3DQ70Z44 454 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 PDZD3Q86UT5 571 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 TPRA1Q86W33 373 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 GPR26Q8NDV2 337 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 OR5H2Q8NGV7 314 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 OR10K1Q8NGX5 313 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 C16orf78Q8WTQ4 265 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 MALSU1Q96EH3 234 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 TXNL4BQ9NX01 149 aaKnown RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF860A6NHJ4 632 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 OR5K4A6NMS3 321 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF736B4DX44 427 aaPredicted RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 SYPP08247 313 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF16P17020 682 aaPredicted RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 LRFN4Q6PJG9 635 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 MAVSQ7Z434 540 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 OR4K13Q8NH42 304 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 HAVCR2Q8TDQ0 301 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ISG20Q96AZ6 181 aaKnown RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 SLC41A3Q96GZ6 507 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 ZNF419Q96HQ0 510 aaPredicted RBP10.84□□□□□ -0.67
VPS39-201ENST00000318006 RCE1Q9Y256 329 aa10.84□□□□□ -0.67
VPS39-201ENST00000318006 MYO18AQ92614 2054 aaKnown RBP10.83□□□□□ -0.67
VPS39-201ENST00000318006 PIGBOS1A0A0B4J2F0 54 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RPS10-NUDT3A0A1W2PQS6 291 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 NPC1O15118 1278 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SDC3O75056 442 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 C1QBP02746 253 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RPS10P46783 165 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 MECP2P51608 486 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 DEFB103AP81534 67 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ARHGAP40Q5TG30 622 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SYNPRQ8TBG9 265 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 GALNT9Q9HCQ5 603 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 PRSS44E7EML9 344 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RNASET2O00584 256 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 B3GALNT1O75752 331 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 PTHP01270 115 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RAB6AP20340 208 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 NTSR1P30989 418 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 PDX1P52945 283 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SLC26A5P58743 744 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 HSD11B2P80365 405 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 DSC1Q08554 894 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 LYPD4Q6UWN0 246 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ZNF534Q76KX8 674 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 COMMD6Q7Z4G1 85 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 GPAT4Q86UL3 456 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 LINC01465Q8N7H1 131 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 ZNF283Q8N7M2 679 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 OR13C3Q8NGS6 347 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 LURAP1Q96LR2 239 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 LMF1Q96S06 567 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SLAMF8Q9P0V8 285 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 IL20RAQ9UHF4 553 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 hCG_1807616A0A1W2PRN6 198 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 M0R3H8 397 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 RTCAO00442 366 aaKnown RBP10.83□□□□□ -0.68
VPS39-201ENST00000318006 ADAM12O43184 909 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 SULT1C4O75897 302 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 AK1P00568 194 aa10.83□□□□□ -0.68
VPS39-201ENST00000318006 CSTAP01040 98 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 140.1 ms