RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 P2RY6Q15077 328 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 PLPPR5Q32ZL2 321 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 GLE1Q53GS7 698 aaKnown RBP13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 ALKBH2Q6NS38 261 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 FIGNL1Q6PIW4 674 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 CDRT4Q8N9R6 151 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 MAPK1IP1LQ8NDC0 245 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 SLC9A6Q92581 669 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 HOXB13Q92826 284 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 KISS1RQ969F8 398 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 CPNE4Q96A23 557 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 L3HYPDHQ96EM0 354 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 ZBED6CLQ96FA7 236 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 KLHL15Q96M94 604 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 HS6ST2Q96MM7 605 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 RNF145Q96MT1 663 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 GRIP2Q9C0E4 1043 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 SLCO5A1Q9H2Y9 848 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 ALG2Q9H553 416 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 C12orf49Q9H741 205 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 L2HGDHQ9H9P8 463 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 MED17Q9NVC6 651 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 LIPT1Q9Y234 373 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 A0A0J9YW62 118 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 GXYLT2A0PJZ3 443 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 GJE1A6NN92 205 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 GCM2O75603 506 aaPredicted RBP13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 NKX2-2O95096 273 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 THBS1P07996 1170 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 PSMA4P25789 261 aaKnown RBP13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 ELK4P28324 431 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 MAP3K8P41279 467 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 SLC18A2Q05940 514 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 ZNF239Q16600 458 aaKnown RBP13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 NRF1Q16656 503 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 CHRFAM7AQ494W8 412 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 SFRP5Q5T4F7 317 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 MFSD12Q6NUT3 480 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 SYT10Q6XYQ8 523 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 TIFABQ6ZNK6 161 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 GABRG1Q8N1C3 465 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 LILRB1Q8NHL6 650 aaPredicted RBP13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 ZFP28Q8NHY6 868 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 RNF128Q8TEB7 428 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 ANP32BQ92688 251 aaKnown RBP13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 ZNF764Q96H86 408 aaPredicted RBP13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 FMO2Q99518 471 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 POTEKPQ9BYX7 375 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 EQTNQ9NQ60 294 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 YAE1D1Q9NRH1 226 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 UBQLN4Q9NRR5 601 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 FBXO34Q9NWN3 711 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 KLHL13Q9P2N7 655 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 TIMM22Q9Y584 194 aa13.16□□□□□ -0.3
CCDC88B-201ENST00000301897 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 A0A087WUV0 522 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 A0A1W2PQD3 144 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 A8MV72 311 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 SCDO00767 359 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 PDPK1O15530 556 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 RSL1D1O76021 490 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 IGKV1D-16P01601 117 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 PYGBP11216 843 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 GPC1P35052 558 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 ACVR1BP36896 505 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 SERPINB4P48594 390 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 TAB1Q15750 504 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 PRSS53Q2L4Q9 553 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 TFAP2EQ6VUC0 442 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 TRIM46Q7Z4K8 759 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 TDRPQ86YL5 185 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 PHC2Q8IXK0 858 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 LILRA2Q8N149 483 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 SLC43A2Q8N370 569 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 OR4C3Q8NH37 302 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 PIWIL2Q8TC59 973 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 PIK3R3Q92569 461 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 CCDC126Q96EE4 140 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 RHNO1Q9BSD3 238 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 RRAGDQ9NQL2 400 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 TMEM216Q9P0N5 145 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 NTMQ9P121 344 aa13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 MAGED1Q9Y5V3 778 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-201ENST00000301897 ALPK2Q86TB3 2170 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 EXOC1LA0A1B0GW35 172 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 PRKD3O94806 890 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 IGHV4-39P01824 125 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 OPN1LWP04000 364 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 YES1P07947 543 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 GSTA1P08263 222 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 CDKN1AP38936 164 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 MANFP55145 182 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 BSPH1Q075Z2 132 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 HSPB3Q12988 150 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 ITGADQ13349 1161 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 NOXRED1Q6NXP6 359 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 ZCCHC12Q6PEW1 402 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 DNM1P46Q6ZS02 220 aa13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 MTERF4Q7Z6M4 381 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-201ENST00000301897 DTX2Q86UW9 622 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms