RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ZNF136P52737 540 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 RPS3AP61247 264 aaKnown RBP14.19□□□□□ -0.14
SF3B4-201ENST00000271628 SNRPGP62308 76 aaKnown RBP14.19□□□□□ -0.14
SF3B4-201ENST00000271628 TSPAN31Q12999 210 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 SRSF5Q13243 272 aaKnown RBP14.19□□□□□ -0.14
SF3B4-201ENST00000271628 TIGD6Q17RP2 521 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 C12orf73Q69YU5 71 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 USP43Q70EL4 1123 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 KANSL1Q7Z3B3 1105 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 AMER2Q8N7J2 671 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 OR7G1Q8NGA0 311 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 PIGXQ8TBF5 258 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 CRELD1Q96HD1 420 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 CNPPD1Q9BV87 410 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 KCNE5Q9UJ90 142 aa14.19□□□□□ -0.14
SF3B4-201ENST00000271628 TNRC6BQ9UPQ9 1833 aaKnown RBP14.19□□□□□ -0.14
SF3B4-201ENST00000271628 CENPVL1A0A0U1RR11 272 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 M0R082 166 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 TAF4O00268 1085 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 SOX14O95416 240 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 MYF5P13349 255 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 PGDP52209 483 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 CSTF1Q05048 431 aaKnown RBP14.18□□□□□ -0.14
SF3B4-201ENST00000271628 DSG2Q14126 1118 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 HLA-BQ31612 363 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 AGAP7PQ5VUJ5 663 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 QSOX2Q6ZRP7 698 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 GDF7Q7Z4P5 450 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 GATAD2AQ86YP4 633 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 C1orf210Q8IVY1 113 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 NLGN4XQ8N0W4 816 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 OR8J1Q8NGP2 316 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 PIGKQ92643 395 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF304Q9HCX3 659 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 LANCL2Q9NS86 450 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 TESQ9UGI8 421 aaKnown RBP14.18□□□□□ -0.14
SF3B4-201ENST00000271628 ERVK-19Q9WJR5 959 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 TRAPPC13A5PLN9 417 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 SAGE2PA6NJ88 616 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 HRKO00198 91 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 DSCR3O14972 297 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 ATP6V1G1O75348 118 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 TP53P04637 393 aaPredicted RBP14.18□□□□□ -0.14
SF3B4-201ENST00000271628 RPLP0P05388 317 aaKnown RBP14.18□□□□□ -0.14
SF3B4-201ENST00000271628 DRD5P21918 477 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 OR1D4P47884 311 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 GIPRP48546 466 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 HOXC5Q00444 222 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 MBOAT2Q6ZWT7 520 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 PRICKLE2Q7Z3G6 844 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 SLC46A3Q7Z3Q1 461 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 GRAMD2AQ8IUY3 354 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 FAM181AQ8N9Y4 354 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 C16orf52Q8NHV5 167 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 NUDT22Q9BRQ3 303 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 FGF21Q9NSA1 209 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 C14orf105Q9NVL8 296 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 CNOT2Q9NZN8 540 aaKnown RBP14.18□□□□□ -0.14
SF3B4-201ENST00000271628 DHCR7Q9UBM7 475 aaKnown RBP14.18□□□□□ -0.14
SF3B4-201ENST00000271628 UGT2A1Q9Y4X1 527 aa14.18□□□□□ -0.14
SF3B4-201ENST00000271628 SDK1Q7Z5N4 2213 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 OR2W5A6NFC9 320 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 EFCAB10A6NFE3 127 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 SMSP52788 366 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 PSMD4P55036 377 aaKnown RBP14.17□□□□□ -0.14
SF3B4-201ENST00000271628 PEAR1Q5VY43 1037 aaPredicted RBP14.17□□□□□ -0.14
SF3B4-201ENST00000271628 NKAIN4Q8IVV8 208 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 RNF113BQ8IZP6 322 aaKnown RBP14.17□□□□□ -0.14
SF3B4-201ENST00000271628 STX19Q8N4C7 294 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF615Q8N8J6 731 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 C9orf43Q8TAL5 461 aaPredicted RBP14.17□□□□□ -0.14
SF3B4-201ENST00000271628 ZNF501Q96CX3 271 aaPredicted RBP14.17□□□□□ -0.14
SF3B4-201ENST00000271628 ZBTB20Q9HC78 741 aaPredicted RBP14.17□□□□□ -0.14
SF3B4-201ENST00000271628 C11orf16Q9NQ32 467 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.17□□□□□ -0.14
SF3B4-201ENST00000271628 SLC7A7Q9UM01 511 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 CFL2Q9Y281 166 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 UNC13CQ8NB66 2214 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 CABIN1Q9Y6J0 2220 aa14.17□□□□□ -0.14
SF3B4-201ENST00000271628 A0A1B0GX78 115 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 METTL15A6NJ78 407 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 C17orf105B2RV13 164 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 HOXD12P35452 270 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 STAT5AP42229 794 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 OMPP47874 163 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 RFX3P48380 749 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 CDK5Q00535 292 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 ACY1Q03154 408 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 RASSF6Q6ZTQ3 369 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 RABEPKQ7Z6M1 372 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 RCBTB1Q8NDN9 531 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 KBTBD8Q8NFY9 601 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 SLC35B4Q969S0 331 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 ZC3H10Q96K80 434 aaKnown RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 GPA33Q99795 319 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 DPYSL5Q9BPU6 564 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 PRRG3Q9BZD7 231 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 NXF2Q9GZY0 626 aaKnown RBP14.16□□□□□ -0.14
SF3B4-201ENST00000271628 SP140LQ9H930 580 aa14.16□□□□□ -0.14
SF3B4-201ENST00000271628 AMBNQ9NP70 447 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms