RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 SNX13Q9Y5W8 968 aa11.29□□□□□ -0.6
LINC00339-213ENST00000642137 PTPRQQ9UMZ3 2332 aa11.29□□□□□ -0.6
LINC00339-213ENST00000642137 NINQ8N4C6 2090 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 PRAMEF25A6NGN4 478 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 ERICH4A6NGS2 130 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 SERINC4A6NH21 518 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 H3BNH8 94 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 ACOT8O14734 319 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 ARPC2O15144 300 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 NDUFB5O43674 189 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 DPM1O60762 260 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 SNX4O95219 450 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 C8BP07358 591 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 SP1P08047 785 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 CCL3P10147 92 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 NID1P14543 1247 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 CD46P15529 392 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 NQO1P15559 274 aaKnown RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 NCK1P16333 377 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 AQP1P29972 269 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 PRKAR1BP31321 381 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 TNFSF10P50591 281 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 GAS1P54826 345 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 KCNJ2P63252 427 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 SELENOWP63302 87 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 DMTNQ08495 405 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 C17orf67Q0P5P2 114 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 KCNAB2Q13303 367 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 FGFBP1Q14512 234 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 LIN52Q52LA3 116 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 MTX3Q5HYI7 312 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 ZNF311Q5JNZ3 666 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 PDZK1Q5T2W1 519 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 LCN8Q6JVE9 175 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 DHRS4L2Q6PKH6 230 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 C19orf48Q6RUI8 117 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 APOOLQ6UXV4 268 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 EIF3MQ7L2H7 374 aaKnown RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 DHFR2Q86XF0 187 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 ARMC8Q8IUR7 673 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 CMIPQ8IY22 773 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 EID3Q8N140 333 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 PSD4Q8NDX1 1056 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 CATSPER1Q8NEC5 780 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 WDR60Q8WVS4 1066 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 POP5Q969H6 163 aaKnown RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 UTP4Q969X6 686 aaKnown RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 FAM162AQ96A26 154 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 TAMM41Q96BW9 452 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 NSMCE2Q96MF7 247 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 FRMD6Q96NE9 622 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 RAB3IPQ96QF0 476 aaPredicted RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 PINK1Q9BXM7 581 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 TBL1XR1Q9BZK7 514 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 QRSL1Q9H0R6 528 aaKnown RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 ARMC7Q9H6L4 198 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 METTL7AQ9H8H3 244 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 EVA1AQ9H8M9 152 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 PROK2Q9HC23 129 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 DCAF13Q9NV06 445 aaKnown RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 SEC14L3Q9UDX4 400 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 RPS6KA6Q9UK32 745 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 POMPQ9Y244 141 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 SLC35A3Q9Y2D2 325 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 CEP295Q9C0D2 2601 aa11.28□□□□□ -0.6
LINC00339-213ENST00000642137 TNRC6AQ8NDV7 1962 aaKnown RBP11.28□□□□□ -0.6
LINC00339-213ENST00000642137 TRAV17A0A0B4J275 112 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 CFAP73A6NFT4 308 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 SLC25A12O75746 678 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 ANGPTL1O95841 491 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 F10P00742 488 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 KCNJ5P48544 419 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 CRYBA2P53672 197 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 EEF1A1P68104 462 aaKnown RBP11.27□□□□□ -0.61
LINC00339-213ENST00000642137 DUSP7Q16829 419 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 COL28A1Q2UY09 1125 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 ZNF766Q5HY98 468 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 RNF220Q5VTB9 566 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 FNDC7Q5VTL7 733 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 MARCH3Q86UD3 253 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 VRK2Q86Y07 508 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 GRAMD2AQ8IUY3 354 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 LZICQ8WZA0 190 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 SCMH1Q96GD3 660 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 TMEM41AQ96HV5 264 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 C5orf34Q96MH7 638 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 RNF145Q96MT1 663 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 OSBPL11Q9BXB4 747 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 RSPO3Q9BXY4 272 aaPredicted RBP11.27□□□□□ -0.61
LINC00339-213ENST00000642137 OLAHQ9NV23 265 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 ADPRHL2Q9NX46 363 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 KLRF1Q9NZS2 232 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 PRDM4Q9UKN5 801 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 BAG5Q9UL15 447 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 ZNF443Q9Y2A4 671 aaPredicted RBP11.27□□□□□ -0.61
LINC00339-213ENST00000642137 KLF13Q9Y2Y9 288 aaPredicted RBP11.27□□□□□ -0.61
LINC00339-213ENST00000642137 ASPMQ8IZT6 3477 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 ZFHX4Q86UP3 3567 aa11.27□□□□□ -0.61
LINC00339-213ENST00000642137 CENPVL1A0A0U1RR11 272 aa11.26□□□□□ -0.61
LINC00339-213ENST00000642137 AQP12BA6NM10 295 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms