RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 RPL23AP62750 156 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GPR157Q5UAW9 335 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 STEAP4Q687X5 459 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 HBMQ6B0K9 141 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GPR155Q7Z3F1 870 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 LHFPL3Q86UP9 236 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 PDZD3Q86UT5 571 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM173Q86WV6 379 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CARM1Q86X55 608 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GRPEL2Q8TAA5 225 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 IL1F10Q8WWZ1 152 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 C11orf40Q8WZ69 217 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ESAMQ96AP7 390 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 INTS12Q96CB8 462 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 HSH2DQ96JZ2 352 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 NKX3-1Q99801 234 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 FUZQ9BT04 418 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TSPAN10Q9H1Z9 355 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GNG13Q9P2W3 67 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ADAMTS5Q9UNA0 930 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 PROCRQ9UNN8 238 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CASP8AP2Q9UKL3 1982 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SPAG17Q6Q759 2223 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 AGAP5A6NIR3 686 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF99A8MXY4 864 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 PIRO00625 290 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 KIAA0355O15063 1070 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 EIF1BO60739 113 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RGS9O75916 674 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 F3P13726 295 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ACTBP60709 375 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ACTG1P63261 375 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 MICAQ29983 383 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 PAN3Q58A45 887 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 NDUFAF5Q5TEU4 345 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TECPR1Q7Z6L1 1165 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TMPRSS12Q86WS5 348 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CDRT4Q8N9R6 151 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ZUFSPQ96AP4 578 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RANBP3Q9H6Z4 567 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 PAQR5Q9NXK6 330 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 KLF13Q9Y2Y9 288 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SCN3AQ9NY46 2000 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CRYBG1Q9Y4K1 1723 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 A0A096LPI6 279 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 STMND1H3BQB6 276 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 LGALS8O00214 317 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 EIF3FO00303 357 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SERPINA5P05154 406 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 DBHP09172 617 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM11P17152 192 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RHCEP18577 417 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 MSX2P35548 267 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 NAA10P41227 235 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 NUDT6P53370 316 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SUB1P53999 127 aaKnown RBP eCLIP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ERV3-1Q14264 604 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 GPR149Q86SP6 731 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 LRRC18Q8N456 261 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 C19orf47Q8N9M1 422 aaKnown RBP5.79□□□□□ -1.48
SCN1A-217ENST00000637988 POGLUT1Q8NBL1 392 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RLN3Q8WXF3 142 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 SARAFQ96BY9 339 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 CGREF1Q99674 301 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 ERVK-19Q9WJR5 959 aa5.79□□□□□ -1.48
SCN1A-217ENST00000637988 RP1P56715 2156 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CD300LBA8K4G0 201 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 EPHA1P21709 976 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PCMT1P22061 227 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SOX2P48431 317 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 GALNT1Q10472 559 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM205Q6UW68 189 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 C5orf46Q6UWT4 87 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TMPRSS7Q7RTY8 843 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TP53INP2Q8IXH6 220 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CBR4Q8N4T8 237 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CISD2Q8N5K1 135 aaKnown RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 OR4A16Q8NH70 328 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SNAPC3Q92966 411 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PWWP2AQ96N64 755 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TIMM29Q9BSF4 260 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 S100A14Q9HCY8 104 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FBXO7Q9Y3I1 522 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SLC5A10A0PJK1 596 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CEBPZOSA8MTT3 80 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 APOA2P02652 100 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 TBPP20226 339 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FKBP2P26885 142 aaKnown RBP5.78□□□□□ -1.48
SCN1A-217ENST00000637988 HTR5AP47898 357 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 C15orf39Q6ZRI6 1047 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SGPP2Q8IWX5 399 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PM20D2Q8IYS1 436 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 PIGCQ92535 297 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF649Q9BS31 505 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 CD320Q9NPF0 282 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 MAN2C1Q9NTJ4 1040 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 NID2Q14112 1375 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 FAM230AA0A1W2PPH8 454 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 H0YAE9 185 aa5.78□□□□□ -1.48
SCN1A-217ENST00000637988 SLC22A1O15245 554 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms