RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CACNA1CQ13936 2221 aa18.83■□□□□ 0.61
CLN3-240ENST00000631023 A0A1W2PQD3 144 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 H3BNH8 94 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 WDR1O75083 606 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 ACTL6AO96019 429 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 HOXD4P09016 255 aaPredicted RBP18.83■□□□□ 0.6
CLN3-240ENST00000631023 GABRA1P14867 456 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 SMSP52788 366 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 AGKQ53H12 422 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 NHSL2Q5HYW2 709 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 EMC4Q5J8M3 183 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 VASNQ6EMK4 673 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 ZNF585AQ6P3V2 769 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 RNF130Q86XS8 419 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 OR2M3Q8NG83 312 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 PHF10Q8WUB8 498 aaKnown RBP18.83■□□□□ 0.6
CLN3-240ENST00000631023 ABTB1Q969K4 478 aaPredicted RBP18.83■□□□□ 0.6
CLN3-240ENST00000631023 PSMG3-AS1Q96PY0 264 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 ALKBH4Q9NXW9 302 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 SLC6A5Q9Y345 797 aa18.83■□□□□ 0.6
CLN3-240ENST00000631023 IGLV3-32A0A0A0MS00 114 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 ADAM10O14672 748 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 RNF224P0DH78 156 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 ACVR2AP27037 513 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 MSX1P28360 303 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 DCTP40126 519 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 MAGEA8P43361 318 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 ATP12AP54707 1039 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 HEPHL1Q6MZM0 1159 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 DNAJC14Q6Y2X3 702 aaPredicted RBP18.82■□□□□ 0.6
CLN3-240ENST00000631023 MTERF4Q7Z6M4 381 aaKnown RBP18.82■□□□□ 0.6
CLN3-240ENST00000631023 FUNDC1Q8IVP5 155 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 RAB8BQ92930 207 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 SPDL1Q96EA4 605 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 TIMP4Q99727 224 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 HRH3Q9Y5N1 445 aa18.82■□□□□ 0.6
CLN3-240ENST00000631023 NR5A2O00482 541 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 BMP7P18075 431 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 PTGER4P35408 488 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 CRYZQ08257 329 aaKnown RBP18.81■□□□□ 0.6
CLN3-240ENST00000631023 SF3B4Q15427 424 aaKnown RBP eCLIP18.81■□□□□ 0.62e-7■■■■□ 24.8
CLN3-240ENST00000631023 AAGABQ6PD74 315 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 ENPP6Q6UWR7 440 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 PM20D2Q8IYS1 436 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 ZFP90Q8TF47 636 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 GTF2H4Q92759 462 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 DMRTA2Q96SC8 542 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 TMEM120AQ9BXJ8 343 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 NMUR2Q9GZQ4 415 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 POLE3Q9NRF9 147 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 MRGBPQ9NV56 204 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 AHRRA9YTQ3 701 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 DYNC1I1O14576 645 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 ZIC3O60481 467 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 ARFIP2P53365 341 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 GPR68Q15743 365 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 KLHL26Q53HC5 615 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 XKRXQ6PP77 449 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 MRGPRGQ86SM5 289 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 GATSQ8NAP1 163 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 ROPN1LQ96C74 230 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 SFXN2Q96NB2 322 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 UGT2B28Q9BY64 529 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 LIPT1Q9Y234 373 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 DTNAQ9Y4J8 743 aa18.81■□□□□ 0.6
CLN3-240ENST00000631023 HECTD1Q9ULT8 2610 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 C17orf51A8MQB3 221 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 HMGN4O00479 90 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 GUSBP08236 651 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 HK1P19367 917 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 HPCAP84074 193 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 ZNF630Q2M218 657 aaPredicted RBP18.8■□□□□ 0.6
CLN3-240ENST00000631023 GLYR1Q49A26 553 aaPredicted RBP18.8■□□□□ 0.6
CLN3-240ENST00000631023 SLC2A7Q6PXP3 512 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 ZNF808Q8N4W9 903 aaPredicted RBP18.8■□□□□ 0.6
CLN3-240ENST00000631023 PHOSPHO1Q8TCT1 267 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 C1GALT1C1Q96EU7 318 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 ZNF350Q9GZX5 532 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 TPT1P8Q9HAU6 139 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 SLC6A13Q9NSD5 602 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 RPH3AQ9Y2J0 694 aaPredicted RBP18.8■□□□□ 0.6
CLN3-240ENST00000631023 WDR45Q9Y484 360 aa18.8■□□□□ 0.6
CLN3-240ENST00000631023 ASH1LQ9NR48 2969 aaKnown RBP18.79■□□□□ 0.6
CLN3-240ENST00000631023 A0A096LPI6 279 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 NPIPA5A0A0B4J1W7 369 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 B4DXG7 233 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 NPIPA7E9PJI5 369 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 NPIPB9F8W1W9 429 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 GTPBP1O00178 669 aaKnown RBP18.79■□□□□ 0.6
CLN3-240ENST00000631023 NPIPA8P0DM63 369 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 AGAP20933 346 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 CHMP24386 653 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 ADORA2A-AS1P86434 159 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 GPAT3Q53EU6 434 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 B3GNT6Q6ZMB0 384 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 ZNF614Q8N883 585 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 PNPT1Q8TCS8 783 aaKnown RBP18.79■□□□□ 0.6
CLN3-240ENST00000631023 PRDM14Q9GZV8 571 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 COQ3Q9NZJ6 369 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 MKLN1Q9UL63 735 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms