RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GTF2E2P29084 291 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 CD97P48960 835 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 EEF1A1P68104 462 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 ZNF155Q12901 538 aaPredicted RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 TSPAN31Q12999 210 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 TRIM16LQ309B1 348 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 DEFB133Q30KQ1 61 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 PRAMEF8Q5VWM4 474 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 PRAMEF7Q5VXH5 474 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ARL14Q8N4G2 192 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 FAM26EQ8N5C1 309 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ZNF655Q8N720 491 aaPredicted RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 ACOT11Q8WXI4 607 aaPredicted RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 SAMD8Q96LT4 415 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 PTCHD1Q96NR3 888 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ANKHQ9HCJ1 492 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 LYRM4Q9HD34 91 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 FBXO8Q9NRD0 319 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 LSM2Q9Y333 95 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 MAU2Q9Y6X3 613 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 IGHV1OR15-9A0A0B4J2B8 117 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 TBX1O43435 398 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 MBTPS2O43462 519 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ADAM11O75078 769 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ZNF12P17014 697 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 MAOAP21397 527 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 IFNA8P32881 189 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 PGDP52209 483 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 KCNAB1Q14722 419 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 NCF4Q15080 339 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 TMEM201Q5SNT2 666 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 CD300LDQ6UXZ3 194 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 CHRDL2Q6WN34 429 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 AMER2Q8N7J2 671 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 NANOGP1Q8N7R0 232 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 C19orf47Q8N9M1 422 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 C9orf43Q8TAL5 461 aaPredicted RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 TGM7Q96PF1 710 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 WDR12Q9GZL7 423 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 TWSG1Q9GZX9 223 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 SEMA6CQ9H3T2 930 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 MED20Q9H944 212 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 CACYBPQ9HB71 228 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 TOR4AQ9NXH8 423 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 NTMQ9P121 344 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 POMT2Q9UKY4 750 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 HEATR5AQ86XA9 2040 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 CBX7O95931 251 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 SCG5P05408 212 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 HOXD12P35452 270 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 RPS19P39019 145 aaKnown RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 EFNB1P98172 346 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PLAURQ03405 335 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 CD300CQ08708 224 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 STX4Q12846 297 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 OR1Q1Q15612 314 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 OCLNQ16625 522 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PDZK1Q5T2W1 519 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 SAMD14Q8IZD0 417 aaPredicted RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 ZNF619Q8N2I2 560 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 VWA5B2Q8N398 1253 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 FAM83FQ8NEG4 500 aaPredicted RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 CHPT1Q8WUD6 406 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 TAPBPLQ9BX59 468 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 ZNF350Q9GZX5 532 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 SNTG1Q9NSN8 517 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 ITGB1BP2Q9UKP3 347 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PRELID1Q9Y255 219 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 TMEM184BQ9Y519 407 aaPredicted RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 SPIN1Q9Y657 262 aaPredicted RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 OR5K4A6NMS3 321 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PLD2O14939 933 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PLOD3O60568 738 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PIPP12273 146 aaPredicted RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 MAKP20794 623 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 GSTM3P21266 225 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 CCR5P51681 352 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 ARPC4P59998 168 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 NDUFA9Q16795 377 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 NDUFAF6Q330K2 333 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PRAMEF17Q5VTA0 474 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 SYT13Q7L8C5 426 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 CDRT4Q8N9R6 151 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 TMEM163Q8TC26 289 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 SMAP2Q8WU79 429 aaPredicted RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 S100ZQ8WXG8 99 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 TM9SF4Q92544 642 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 CNOT9Q92600 299 aaKnown RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 RBM18Q96H35 190 aaKnown RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 ABHD8Q96I13 439 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 SPACA7Q96KW9 195 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 SLC38A3Q99624 504 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 TM9SF2Q99805 663 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 PRSS27Q9BQR3 290 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 MND1Q9BWT6 205 aa9.86□□□□□ -0.83
CUX1-221ENST00000622516 TESQ9UGI8 421 aaKnown RBP9.86□□□□□ -0.83
CUX1-221ENST00000622516 FREM2Q5SZK8 3169 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 ARID1BQ8NFD5 2236 aaPredicted RBP9.85□□□□□ -0.83
CUX1-221ENST00000622516 FUOMA2VDF0 154 aa9.85□□□□□ -0.83
CUX1-221ENST00000622516 IGKV1D-16P01601 117 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms