RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 NPIPB9F8W1W9 429 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 HMGN4O00479 90 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 SCDO00767 359 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 ANP32DO95626 131 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 CLDN1O95832 211 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 TROVE2P10155 538 aaKnown RBP eCLIP13.81□□□□□ -0.2
LIG1-219ENST00000600055 HPGDP15428 266 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 CAPN3P20807 821 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 DSCR4P56555 118 aaPredicted RBP13.81□□□□□ -0.2
LIG1-219ENST00000600055 C17orf67Q0P5P2 114 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 RCAN2Q14206 197 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 GPR68Q15743 365 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 ARHGAP11BQ3KRB8 267 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 C6orf10Q5SRN2 563 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 VASNQ6EMK4 673 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 RTL6Q6ICC9 239 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 HEPHL1Q6MZM0 1159 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 C16orf62Q7Z3J2 963 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 ZFP90Q8TF47 636 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 ITLN2Q8WWU7 325 aaPredicted RBP13.81□□□□□ -0.2
LIG1-219ENST00000600055 ABTB1Q969K4 478 aaPredicted RBP13.81□□□□□ -0.2
LIG1-219ENST00000600055 SPDL1Q96EA4 605 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 SH3YL1Q96HL8 342 aaPredicted RBP13.81□□□□□ -0.2
LIG1-219ENST00000600055 SIKE1Q9BRV8 207 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 PAIP1Q9H074 479 aaKnown RBP13.81□□□□□ -0.2
LIG1-219ENST00000600055 EXD2Q9NVH0 621 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 KCNE5Q9UJ90 142 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 MKLN1Q9UL63 735 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 FAM215AQ9Y5M1 114 aa13.81□□□□□ -0.2
LIG1-219ENST00000600055 IGLV3-32A0A0A0MS00 114 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 CENPVL1A0A0U1RR11 272 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 A0A1W2PQD3 144 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 KDM4EB2RXH2 506 aaPredicted RBP13.8□□□□□ -0.2
LIG1-219ENST00000600055 OIP5O43482 229 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 AK1P00568 194 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ZCCHC18P0CG32 403 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 HK1P19367 917 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ACVR2AP27037 513 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 STARP49675 285 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 MVDP53602 400 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ATP12AP54707 1039 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 GFRA1P56159 465 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 B3GALT5-AS1P59052 145 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 NDUFAF6Q330K2 333 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 KLHL26Q53HC5 615 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 NHSL2Q5HYW2 709 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 PAGE3Q5JUK9 113 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ATAD3BQ5T9A4 648 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ARSKQ6UWY0 536 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 MRGPRGQ86SM5 289 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 IFNEQ86WN2 208 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ULK2Q8IYT8 1036 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ZNF614Q8N883 585 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 OR5M1Q8NGP8 315 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ROPN1LQ96C74 230 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 C1GALT1C1Q96EU7 318 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 WDYHV1Q96HA8 205 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 ZNF350Q9GZX5 532 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 HOXD1Q9GZZ0 328 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 TPT1P8Q9HAU6 139 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 SLAMF8Q9P0V8 285 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 TRIM33Q9UPN9 1127 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 CAMK2AQ9UQM7 478 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 MRPS18CQ9Y3D5 142 aaKnown RBP13.8□□□□□ -0.2
LIG1-219ENST00000600055 PCDHB14Q9Y5E9 798 aa13.8□□□□□ -0.2
LIG1-219ENST00000600055 GTF3C1Q12789 2109 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 FIGNL2A6NMB9 653 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 SHISA8B8ZZ34 492 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 TNFRSF21O75509 655 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 STX11O75558 287 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 KRT75O95678 551 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 AGR2O95994 175 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 HOXB9P17482 250 aaPredicted RBP13.79□□□□□ -0.2
LIG1-219ENST00000600055 ARFIP2P53365 341 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 NUP107P57740 925 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 PMPCAQ10713 525 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 CDSNQ15517 529 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 MAPK14Q16539 360 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 SYPL1Q16563 259 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 PDZK1Q5T2W1 519 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 HIST2H2BCQ6DN03 193 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 TYW3Q6IPR3 259 aaKnown RBP13.79□□□□□ -0.2
LIG1-219ENST00000600055 MTFR2Q6P444 385 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 HMGN2P46Q86SG4 172 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 ANKFN1Q8N957 763 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 ZNF527Q8NB42 609 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 PHOSPHO1Q8TCT1 267 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 PHF10Q8WUB8 498 aaKnown RBP13.79□□□□□ -0.2
LIG1-219ENST00000600055 SFXN2Q96NB2 322 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 ZNF317Q96PQ6 595 aaPredicted RBP13.79□□□□□ -0.2
LIG1-219ENST00000600055 NPAS1Q99742 590 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 PRDM14Q9GZV8 571 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 PTGES2Q9H7Z7 377 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 DTNAQ9Y4J8 743 aa13.79□□□□□ -0.2
LIG1-219ENST00000600055 USP9XQ93008 2570 aaPredicted RBP13.79□□□□□ -0.2
LIG1-219ENST00000600055 A0A096LPI6 279 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 HCRTR2O43614 444 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 WDR1O75083 606 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 UGT2B17O75795 530 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 H6PDO95479 791 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms