RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 UGT2B17O75795 530 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 SOX30O94993 753 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 H6PDO95479 791 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 KRT75O95678 551 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 SNRPB2P08579 225 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 ATP6V1C1P21283 382 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 TCEA1P23193 301 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 CA7P43166 264 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 B3GALT5-AS1P59052 145 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 PLAURQ03405 335 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 SELPLGQ14242 412 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 RGNQ15493 299 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 GPR68Q15743 365 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 GXYLT1Q4G148 440 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 LSRQ86X29 649 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 RPRMLQ8N4K4 120 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 DPP10Q8N608 796 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 OR5M9Q8NGP3 310 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 FAM57AQ8TBR7 257 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 RELTQ969Z4 430 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 RSPO3Q9BXY4 272 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 OR2B2Q9GZK3 357 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 QRSL1Q9H0R6 528 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 SLC38A1Q9H2H9 487 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 LDAHQ9H6V9 325 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 PNPLA3Q9NST1 481 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 EXD2Q9NVH0 621 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 PPP4R1LQ9P1A2 415 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 NDUFAF1Q9Y375 327 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 PCDHGB3Q9Y5G1 929 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 NCKAP5O14513 1909 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 LOC100653049A0A140TA62 436 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 A0A1W2PQD3 144 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 CLDN24A6NM45 220 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 KDM4EB2RXH2 506 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 SHISA8B8ZZ34 492 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 AQP7O14520 342 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 NDUFB5O43674 189 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 HCN1O60741 890 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 TNFRSF21O75509 655 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 STX11O75558 287 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 KRT34O76011 436 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 TFPTP0C1Z6 253 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 ABOP16442 354 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 DPP4P27487 766 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 SRD5A2P31213 254 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 CRATP43155 626 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 C17orf67Q0P5P2 114 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 TOMM20Q15388 145 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 ZNF141Q15928 474 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 RUNDC3AQ59EK9 446 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 PDZK1Q5T2W1 519 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 ARHGAP11AQ6P4F7 1023 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 CBLN3Q6UW01 205 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 ARSKQ6UWY0 536 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 C16orf62Q7Z3J2 963 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 CD163Q86VB7 1156 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 FJX1Q86VR8 437 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 TREML1Q86YW5 311 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 OR4K17Q8NGC6 315 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 OR5M1Q8NGP8 315 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 TSPEARQ8WU66 669 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 SH3YL1Q96HL8 342 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 TIMP4Q99727 224 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 CPPED1Q9BRF8 314 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 CCDC106Q9BWC9 280 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 B4GALT7Q9UBV7 327 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 LEF1Q9UJU2 399 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 RPH3AQ9Y2J0 694 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 DTNAQ9Y4J8 743 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 GMEB1Q9Y692 573 aa12.9□□□□□ -0.34
SHKBP1-217ENST00000598558 NINQ8N4C6 2090 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 POLEQ07864 2286 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 SCDO00767 359 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 KIAA0513O60268 411 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 AK1P00568 194 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 TPOP07202 933 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 GUSBP08236 651 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 BMP2P12643 396 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 BMP7P18075 431 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 STARP49675 285 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 CLK3P49761 638 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 GFRA1P56159 465 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF117Q03924 483 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 RBPJQ06330 500 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 CRYZQ08257 329 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 CAPRIN1Q14444 709 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 GPAT3Q53EU6 434 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 C4orf17Q53FE4 359 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 ATAD3BQ5T9A4 648 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 VASNQ6EMK4 673 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 RTL6Q6ICC9 239 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 PIGWQ7Z7B1 504 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 MTDHQ86UE4 582 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 SNX32Q86XE0 403 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 MARVELD2Q8N4S9 558 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 POU5F2Q8N7G0 328 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 PHOSPHO1Q8TCT1 267 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 SLC38A5Q8WUX1 472 aa12.89□□□□□ -0.35
SHKBP1-217ENST00000598558 MAL2Q969L2 176 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms