RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MISPQ8IVT2 679 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 GPALPP1Q8IXQ4 340 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 ARMC10Q8N2F6 343 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 TMEM156Q8N614 296 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 OR2T29Q8NH02 315 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 KCNE4Q8WWG9 221 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 SDCCAG3Q96C92 435 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 THOC3Q96J01 351 aaKnown RBP14.03□□□□□ -0.16
TRIM28-209ENST00000597423 ZNF300Q96RE9 604 aaPredicted RBP14.03□□□□□ -0.16
TRIM28-209ENST00000597423 RASL10BQ96S79 203 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 PIP5K1AQ99755 562 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 ARHGDIGQ99819 225 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 POLR2J2Q9GZM3 115 aaKnown RBP14.03□□□□□ -0.16
TRIM28-209ENST00000597423 LHPPQ9H008 270 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 POLR2J3Q9H1A7 115 aaKnown RBP14.03□□□□□ -0.16
TRIM28-209ENST00000597423 VCXQ9H320 206 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 REEP1Q9H902 201 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 C8orf4Q9NR00 106 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 SDHAF3Q9NRP4 125 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 NDUFAF4Q9P032 175 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 ABCG2Q9UNQ0 655 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 PTPRBP23467 1997 aa14.03□□□□□ -0.16
TRIM28-209ENST00000597423 NPIPA5A0A0B4J1W7 369 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 A0A1W2PQD3 144 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 NPIPA7E9PJI5 369 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 E2F6O75461 281 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 ITGA10O75578 1167 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 CSTAP01040 98 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 MT-ND1P03886 318 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 NPIPA8P0DM63 369 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 ITGAMP11215 1152 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 UQCRBP14927 111 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 PLA2G5P39877 138 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 VLDLRP98155 873 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 TRIP10Q15642 601 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 NRF1Q16656 503 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 GRAMD1BQ3KR37 738 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 MRPL2Q5T653 305 aaKnown RBP14.02□□□□□ -0.17
TRIM28-209ENST00000597423 HMGN2P46Q86SG4 172 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 ZAR1Q86SH2 424 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 AMIGO2Q86SJ2 522 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 VASH2Q86V25 355 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 CLIP4Q8N3C7 705 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 VANGL1Q8TAA9 524 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-209ENST00000597423 EME1Q96AY2 570 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 SECISBP2Q96T21 854 aaKnown RBP14.02□□□□□ -0.17
TRIM28-209ENST00000597423 AMBRA1Q9C0C7 1298 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 KCNE5Q9UJ90 142 aa14.02□□□□□ -0.17
TRIM28-209ENST00000597423 ALG1L2C9J202 215 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 NDUFB5O43674 189 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 EIF4E2O60573 245 aaKnown RBP14.01□□□□□ -0.17
TRIM28-209ENST00000597423 FMO6PO60774 539 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 UGT2B11O75310 529 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 DNAJB5O75953 348 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 NADKO95544 446 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-209ENST00000597423 OXSR1O95747 527 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-209ENST00000597423 CELA2AP08217 269 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 ITGA3P26006 1051 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 DEF8Q6ZN54 512 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 C16orf47Q6ZP98 133 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-209ENST00000597423 ZDHHC13Q8IUH4 622 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 LILRA2Q8N149 483 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 SVOPLQ8N434 492 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 PIK3C3Q8NEB9 887 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 PHOSPHO1Q8TCT1 267 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 SPACA9Q96E40 222 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-209ENST00000597423 NRBF2Q96F24 287 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 SGCZQ96LD1 299 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 LMF1Q96S06 567 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 CCNL2Q96S94 520 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-209ENST00000597423 ZNF559Q9BR84 538 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 C9orf16Q9BUW7 83 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 FNDC11Q9BVV2 318 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 OSBPL10Q9BXB5 764 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 SEMA6AQ9H2E6 1030 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 TMEM27Q9HBJ8 222 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 STMN3Q9NZ72 180 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 RIMS3Q9UJD0 308 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 WASF3Q9UPY6 502 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 POLHQ9Y253 713 aa14.01□□□□□ -0.17
TRIM28-209ENST00000597423 M0R3H8 397 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 CASQ2O14958 399 aaPredicted RBP14□□□□□ -0.17
TRIM28-209ENST00000597423 KLK10O43240 276 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 ZNF264O43296 627 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 PEX1O43933 1283 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 ICOSLGO75144 302 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 PRSS23O95084 383 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 UBL4AP11441 157 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 SPINK2P20155 84 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 TNFRSF1BP20333 461 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 DNAJA1P31689 397 aaKnown RBP14□□□□□ -0.17
TRIM28-209ENST00000597423 EVI2BP34910 448 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 CASRP41180 1078 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 SLC6A8P48029 635 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 PTDSS1P48651 473 aaKnown RBP14□□□□□ -0.17
TRIM28-209ENST00000597423 SOX8P57073 446 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 FBXW4P57775 412 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 TAS2R41P59536 307 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 COPZ1P61923 177 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 Q0VFX4 171 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms