RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 RFX3P48380 749 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 CLK3P49761 638 aaKnown RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 SUCLG1P53597 346 aaKnown RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 CLDN20P56880 219 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 PSG6Q00889 435 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 ZNHIT3Q15649 155 aaPredicted RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 SGCBQ16585 318 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 DECR1Q16698 335 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 EXOC3L2Q2M3D2 409 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 TNFAIP8L3Q5GJ75 292 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 ARL13AQ5H913 290 aaPredicted RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 ANKRD34AQ69YU3 496 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 IKBIPQ70UQ0 350 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 ZNF764Q96H86 408 aaPredicted RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 IQCGQ9H095 443 aaKnown RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 MIEF1Q9NQG6 463 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 RRAGDQ9NQL2 400 aaPredicted RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 DDX18Q9NVP1 670 aaKnown RBP13.26□□□□□ -0.29
PNKP-202ENST00000593706 ZNF337Q9Y3M9 751 aa13.26□□□□□ -0.29
PNKP-202ENST00000593706 LSM1O15116 133 aaKnown RBP13.25□□□□□ -0.29
PNKP-202ENST00000593706 GMFGO60234 142 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 CRCPO75575 148 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 PLGP00747 810 aaPredicted RBP13.25□□□□□ -0.29
PNKP-202ENST00000593706 NTSP30990 170 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 PTH2RP49190 550 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 NCBP2P52298 156 aaKnown RBP eCLIP13.25□□□□□ -0.29
PNKP-202ENST00000593706 CLDN15P56746 228 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 IMPG1Q17R60 797 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 XKR7Q5GH72 579 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 TMEM107Q6UX40 140 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 ZCCHC23Q6ZST2 131 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 PLEKHM3Q6ZWE6 761 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 PRIMA1Q86XR5 153 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 ZNF610Q8N9Z0 462 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 C1GALT1C1Q96EU7 318 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 EGLN2Q96KS0 407 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 CCT7Q99832 543 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 PRRG4Q9BZD6 226 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 LRTM1Q9HBL6 345 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 Q9N2J8 555 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 C1orf109Q9NX04 203 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 FAM120CQ9NX05 1096 aaKnown RBP13.25□□□□□ -0.29
PNKP-202ENST00000593706 FLRT3Q9NZU0 649 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 MRTO4Q9UKD2 239 aaKnown RBP13.25□□□□□ -0.29
PNKP-202ENST00000593706 EMC9Q9Y3B6 208 aa13.25□□□□□ -0.29
PNKP-202ENST00000593706 A0A087WV62 115 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 INAFM1C9JVW0 142 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 SLC28A1O00337 649 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 FADS1O60427 444 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 SLITRK5O94991 958 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 CGAP01215 116 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 BPGMP07738 259 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 NEFHP12036 1026 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 SDC1P18827 310 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 TBXA2RP21731 343 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 PSMD4P55036 377 aaKnown RBP13.24□□□□□ -0.29
PNKP-202ENST00000593706 C2orf80Q0P641 193 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 CYP27C1Q4G0S4 372 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 RFTN2Q52LD8 501 aaPredicted RBP13.24□□□□□ -0.29
PNKP-202ENST00000593706 FAM214BQ7L5A3 538 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 DUSP19Q8WTR2 217 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 TMEM171Q8WVE6 324 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 TWIST2Q8WVJ9 160 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 TBL1XR1Q9BZK7 514 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 GSX2Q9BZM3 304 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 SSU72Q9NP77 194 aaKnown RBP13.24□□□□□ -0.29
PNKP-202ENST00000593706 STOML1Q9UBI4 398 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 STAB1Q9NY15 2570 aa13.24□□□□□ -0.29
PNKP-202ENST00000593706 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.23□□□□□ -0.29
PNKP-202ENST00000593706 KIAA1324LA8MWY0 1029 aaPredicted RBP13.23□□□□□ -0.29
PNKP-202ENST00000593706 EIF1AYO14602 144 aaKnown RBP13.23□□□□□ -0.29
PNKP-202ENST00000593706 PIP5K1BO14986 540 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 RGS14O43566 566 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 TBX19O60806 448 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 SEC22BO75396 215 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 CNOT4O95628 575 aaKnown RBP13.23□□□□□ -0.29
PNKP-202ENST00000593706 IFI6P09912 130 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 LINC00032P0C843 101 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 SERPINB5P36952 375 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 EIF1AXP47813 144 aaKnown RBP13.23□□□□□ -0.29
PNKP-202ENST00000593706 CTBP2P56545 445 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 PDE7AQ13946 482 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 KRT71Q3SY84 523 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 BEX5Q5H9J7 111 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 MARCH3Q86UD3 253 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 OR2L13Q8N349 312 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 METTL25Q8N6Q8 603 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 PPP1R14CQ8TAE6 165 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 MARK4Q96L34 752 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 AMDHD1Q96NU7 426 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 GLIPR2Q9H4G4 154 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 FANCFQ9NPI8 374 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 VDAC3Q9Y277 283 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 TRAF6Q9Y4K3 522 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 AP4B1Q9Y6B7 739 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 ABCA1O95477 2261 aa13.23□□□□□ -0.29
PNKP-202ENST00000593706 FBN1P35555 2871 aaKnown RBP13.22□□□□□ -0.29
PNKP-202ENST00000593706 NUP214P35658 2090 aaPredicted RBP13.22□□□□□ -0.29
PNKP-202ENST00000593706 CUBNO60494 3623 aa13.22□□□□□ -0.29
PNKP-202ENST00000593706 SHISA8B8ZZ34 492 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms